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  5. PSME_00015867-RA

PSME_00015867-RA


Description : (at1g02840 : 234.0) SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.; SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink). & (reliability: 468.0) & (original description: no original description)


Gene families : OG_42_0001203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015867-RA
Cluster HCCA clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
Bradi2g27822 No alias SERINE-ARGININE PROTEIN 30 0.03 Orthogroups_2024-Update
Potri.014G129900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Pp1s7_8V6 No alias pre-mrna-splicing factor sf2 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 115 166
No external refs found!