1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00019922-RA

PSME_00019922-RA


Description : (at2g44680 : 360.0) Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.; casein kinase II beta subunit 4 (CKB4); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 3 (TAIR:AT3G60250.2); Has 1093 Blast hits to 1091 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 720.0) & (original description: no original description)


Gene families : OG_42_0001423 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001423_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019922-RA
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Sobic.001G294200.1 No alias regulatory subunit beta of CK-II kinase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005956 protein kinase CK2 complex IEA InterProScan predictions
MF GO:0019887 protein kinase regulator activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004807 triose-phosphate isomerase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0007021 tubulin complex assembly IEP Predicted GO
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
MF GO:0048487 beta-tubulin binding IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000704 Casein_kinase_II_reg-sub 108 322
No external refs found!