PSME_00020825-RA

Description : (at5g02610 : 157.0) Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1). & (reliability: 314.0) & (original description: no original description)

Gene families : OG_42_0001364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001364_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00020825-RA
Cluster	HCCA clusters: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
438324	No alias	Ribosomal L29 family protein	0.16	Orthogroups_2024-Update
A4A49_28237	No alias	60s ribosomal protein l35-4	0.11	Orthogroups_2024-Update
A4A49_63512	No alias	60s ribosomal protein l35-4	0.11	Orthogroups_2024-Update
AC206642.4_FG001	No alias	Ribosomal L29 family protein	0.09	Orthogroups_2024-Update
At2g39390	No alias	60S ribosomal protein L35-2...	0.04	Orthogroups_2024-Update
Bradi3g43840	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Bradi5g07170	No alias	Ribosomal L29 family protein	0.11	Orthogroups_2024-Update
Brara.A03526.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Brara.B00059.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.C02014.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Brara.C03268.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Brara.E03085.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Cre14.g617900	No alias	Ribosomal L29 family protein	0.23	Orthogroups_2024-Update
GRMZM2G043279	No alias	Ribosomal L29 family protein	0.07	Orthogroups_2024-Update
Glyma.10G291500	No alias	Ribosomal L29 family protein	0.16	Orthogroups_2024-Update
Glyma.13G133900	No alias	Ribosomal L29 family protein	0.06	Orthogroups_2024-Update
Glyma.20G240700	No alias	Ribosomal L29 family protein	0.13	Orthogroups_2024-Update
HORVU2Hr1G068120.2	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Kfl00608_0050	kfl00608_0050_v1.1	(at5g02610 : 177.0) Ribosomal L29 family protein ;...	0.06	Orthogroups_2024-Update
MA_10429159g0020	No alias	(at5g02610 : 210.0) Ribosomal L29 family protein ;...	0.1	Orthogroups_2024-Update
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.16	Orthogroups_2024-Update
Potri.006G214200	No alias	Ribosomal L29 family protein	0.05	Orthogroups_2024-Update
Potri.008G048800	No alias	Ribosomal L29 family protein	0.06	Orthogroups_2024-Update
Potri.010G212300	No alias	Ribosomal L29 family protein	0.09	Orthogroups_2024-Update
Pp1s102_67V6	No alias	60s ribosomal protein l35	0.09	Orthogroups_2024-Update
Pp1s133_93V6	No alias	60s ribosomal protein l35	0.17	Orthogroups_2024-Update
Pp1s1_489V6	No alias	60s ribosomal protein l35	0.26	Orthogroups_2024-Update
Seita.1G166300.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.7G064700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.004G152400.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Sobic.004G152700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.19	Orthogroups_2024-Update
Solyc04g010240	No alias	60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES)	0.17	Orthogroups_2024-Update
Solyc05g054810	No alias	60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES)	0.19	Orthogroups_2024-Update
Solyc06g075620	No alias	60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES)	0.03	Orthogroups_2024-Update
Sopen04g005430	No alias	Ribosomal L29 protein	0.06	Orthogroups_2024-Update
Sopen05g033280	No alias	Ribosomal L29 protein	0.12	Orthogroups_2024-Update
Sopen06g032020	No alias	Ribosomal L29 protein	0.02	Orthogroups_2024-Update
evm.model.contig_654.2	No alias	(at5g02610 : 134.0) Ribosomal L29 family protein ;...	0.16	Orthogroups_2024-Update
evm.model.tig00000241.79	No alias	(at3g55170 : 158.0) Ribosomal L29 family protein ;...	0.16	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005787	signal peptidase complex	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006465	signal peptide processing	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predicted GO
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predicted GO
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
CC	GO:0044437	vacuolar part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predicted GO
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Predicted GO
CC	GO:0120114	Sm-like protein family complex	IEP	Predicted GO
CC	GO:1905368	peptidase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	8	49

External Links

No external refs found!

PSME_00020825-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation