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PSME_00022573-RA


Description : (at3g18390 : 286.0) embryo defective 1865 (EMB1865); FUNCTIONS IN: RNA binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3B (TAIR:AT4G14510.1); Has 1281 Blast hits to 1142 proteins in 135 species: Archae - 11; Bacteria - 10; Metazoa - 285; Fungi - 118; Plants - 447; Viruses - 43; Other Eukaryotes - 367 (source: NCBI BLink). & (reliability: 572.0) & (original description: no original description)


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00022573-RA
Cluster HCCA clusters: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
Bradi4g14900 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
Sobic.007G107700.1 No alias plastidial RNA splicing factor *(CRS1) 0.03 Orthogroups_2024-Update
Solyc07g039500 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0003919 FMN adenylyltransferase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 160 246
No external refs found!