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  5. PSME_00033773-RA

PSME_00033773-RA


Description : (at2g36710 : 272.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36700.1); Has 6628 Blast hits to 4257 proteins in 552 species: Archae - 11; Bacteria - 922; Metazoa - 2127; Fungi - 511; Plants - 1794; Viruses - 17; Other Eukaryotes - 1246 (source: NCBI BLink). & (p83948|pme3_citsi : 163.0) Pectinesterase-3 precursor (EC 3.1.1.11) (Pectin methylesterase 3) (PE 3) - Citrus sinensis (Sweet orange) & (reliability: 544.0) & (original description: no original description)


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033773-RA
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
A4A49_38924 No alias putative pectinesterase 53 0.02 Orthogroups_2024-Update
At2g47280 No alias Probable pectinesterase 66... 0.03 Orthogroups_2024-Update
At3g24130 No alias Probable pectinesterase 29... 0.03 Orthogroups_2024-Update
Brara.J02514.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Glyma.09G035100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G032220.4 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
PSME_00020051-RA No alias (at5g19730 : 262.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Solyc07g065360 No alias Pectinesterase (AHRD V3.3 *** K4CHL4_SOLLC) 0.04 Orthogroups_2024-Update
Solyc10g083810 No alias No description available 0.02 Orthogroups_2024-Update
Sopen07g022810 No alias Pectinesterase 0.03 Orthogroups_2024-Update
Sopen07g033560 No alias Pectinesterase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 64 347
No external refs found!