Description : (at3g59540 : 127.0) Ribosomal L38e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: Ribosomal L38e protein family (TAIR:AT2G43460.1); Has 621 Blast hits to 621 proteins in 253 species: Archae - 3; Bacteria - 0; Metazoa - 265; Fungi - 127; Plants - 120; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description)
Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00035421-RA | |
Cluster | HCCA clusters: Cluster_45 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
270247 | No alias | Ribosomal L38e protein family | 0.13 | Orthogroups_2024-Update | |
A4A49_59471 | No alias | 60s ribosomal protein l38 | 0.11 | Orthogroups_2024-Update | |
AC190609.3_FG002 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
At2g43460 | No alias | 60S ribosomal protein L38... | 0.02 | Orthogroups_2024-Update | |
At3g59540 | No alias | 60S ribosomal protein L38... | 0.03 | Orthogroups_2024-Update | |
Bradi1g25302 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
Bradi3g41837 | No alias | Ribosomal L38e protein family | 0.04 | Orthogroups_2024-Update | |
Brara.C02203.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
Brara.E00357.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
Brara.I04090.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Cre07.g325746 | No alias | Ribosomal L38e protein family | 0.12 | Orthogroups_2024-Update | |
Glyma.08G100000 | No alias | Ribosomal L38e protein family | 0.13 | Orthogroups_2024-Update | |
HORVU2Hr1G043220.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Kfl00433_0040 | kfl00433_0040_v1.1 | (at3g59540 : 122.0) Ribosomal L38e protein family;... | 0.06 | Orthogroups_2024-Update | |
LOC_Os11g24610 | No alias | 60S ribosomal protein L38, putative, expressed | 0.04 | Orthogroups_2024-Update | |
MA_20588g0010 | No alias | (at3g59540 : 129.0) Ribosomal L38e protein family;... | 0.11 | Orthogroups_2024-Update | |
Mp7g14520.1 | No alias | component RPL38 of LSU proteome component | 0.02 | Orthogroups_2024-Update | |
Potri.007G131800 | No alias | Ribosomal L38e protein family | 0.11 | Orthogroups_2024-Update | |
Potri.010G181200 | No alias | Ribosomal L38e protein family | 0.08 | Orthogroups_2024-Update | |
Potri.017G020000 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
Pp1s227_122V6 | No alias | 60s ribosomal protein l38 | 0.17 | Orthogroups_2024-Update | |
Pp1s288_10V6 | No alias | 60s ribosomal protein l38 | 0.17 | Orthogroups_2024-Update | |
Pp1s46_212V6 | No alias | 60s ribosomal protein l38 | 0.02 | Orthogroups_2024-Update | |
Pp1s67_172V6 | No alias | 60s ribosomal protein l38 | 0.06 | Orthogroups_2024-Update | |
Seita.2G274700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Seita.2G333600.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Seita.2G344700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Seita.6G231700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
Sobic.002G331300.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Sobic.007G184600.2 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
Solyc05g055640 | No alias | ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1) | 0.07 | Orthogroups_2024-Update | |
Solyc11g008510 | No alias | 60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC) | 0.11 | Orthogroups_2024-Update | |
Sopen05g034080 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
Sopen11g004300 | No alias | Ribosomal L38e protein family | 0.09 | Orthogroups_2024-Update | |
evm.model.tig00021719.6 | No alias | (at3g59540 : 110.0) Ribosomal L38e protein family;... | 0.13 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0004576 | oligosaccharyl transferase activity | IEP | Predicted GO |
MF | GO:0004579 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
CC | GO:0005743 | mitochondrial inner membrane | IEP | Predicted GO |
CC | GO:0005750 | mitochondrial respiratory chain complex III | IEP | Predicted GO |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
BP | GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | IEP | Predicted GO |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0015988 | energy coupled proton transmembrane transport, against electrochemical gradient | IEP | Predicted GO |
BP | GO:0015991 | ATP hydrolysis coupled proton transport | IEP | Predicted GO |
CC | GO:0016469 | proton-transporting two-sector ATPase complex | IEP | Predicted GO |
CC | GO:0016471 | vacuolar proton-transporting V-type ATPase complex | IEP | Predicted GO |
CC | GO:0016592 | mediator complex | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
CC | GO:0019866 | organelle inner membrane | IEP | Predicted GO |
BP | GO:0022904 | respiratory electron transport chain | IEP | Predicted GO |
CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
CC | GO:0033176 | proton-transporting V-type ATPase complex | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
CC | GO:0044437 | vacuolar part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
CC | GO:0044455 | mitochondrial membrane part | IEP | Predicted GO |
CC | GO:0045275 | respiratory chain complex III | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
CC | GO:0070069 | cytochrome complex | IEP | Predicted GO |
BP | GO:0090662 | ATP hydrolysis coupled transmembrane transport | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
CC | GO:0098798 | mitochondrial protein complex | IEP | Predicted GO |
CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Predicted GO |
CC | GO:0098803 | respiratory chain complex | IEP | Predicted GO |
BP | GO:0099131 | ATP hydrolysis coupled ion transmembrane transport | IEP | Predicted GO |
BP | GO:0099132 | ATP hydrolysis coupled cation transmembrane transport | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
BP | GO:1902600 | proton transmembrane transport | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
CC | GO:1990234 | transferase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002675 | Ribosomal_L38e | 4 | 70 |
No external refs found! |