1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00035615-RA

PSME_00035615-RA


Description : (at2g47900 : 306.0) Member of TLP family; tubby like protein 3 (TLP3); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby-like protein 9 (TAIR:AT3G06380.1). & (reliability: 602.0) & (original description: no original description)


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035615-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Bradi3g13080 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
Brara.D02855.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J01702.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM5G866954 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
Glyma.17G022700 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
HORVU5Hr1G040000.2 No alias TUB-type transcription factor 0.04 Orthogroups_2024-Update
LOC_Os01g48370 No alias OsFBT1 - F-box and tubby domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_18086g0010 No alias (at1g76900 : 162.0) Member of TLP family; tubby like... 0.04 Orthogroups_2024-Update
Pp1s222_14V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.5G325200.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G267600.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Solyc04g071750 No alias Tubby-like F-box protein (AHRD V3.3 *** K4BTG5_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000007 Tubby_C 19 277
No external refs found!