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  5. PSME_00038705-RA

PSME_00038705-RA


Description : (at3g23330 : 523.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 38045 Blast hits to 13879 proteins in 261 species: Archae - 0; Bacteria - 10; Metazoa - 50; Fungi - 109; Plants - 37267; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink). & (q76c99|rf1_orysa : 102.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1000.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038705-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
82058 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
At2g36730 No alias Pentatricopeptide repeat-containing protein At2g36730... 0.04 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g53600 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi1g68478 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g75980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g15830 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g53140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g40340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.D01648.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02742.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H01279.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.02G144100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G239200 No alias mitochondrial editing factor 19 0.03 Orthogroups_2024-Update
Glyma.04G127500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G034600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G086600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G277600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G206000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G081690.1 No alias RNA editing factor *(OTP86) 0.03 Orthogroups_2024-Update
MA_100287g0010 No alias (at3g12770 : 646.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
MA_103698g0030 No alias (at3g13770 : 453.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_10429043g0020 No alias (at4g18750 : 616.0) Encodes a pentatricopeptide (PPR)... 0.08 Orthogroups_2024-Update
MA_117650g0010 No alias (at1g11290 : 615.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_122899g0010 No alias (at3g57430 : 674.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
MA_136326g0010 No alias (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_211508g0010 No alias (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... 0.11 Orthogroups_2024-Update
MA_286190g0010 No alias (at3g63370 : 605.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_442926g0010 No alias (at4g13650 : 697.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_49545g0010 No alias (at1g11290 : 523.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_66417g0010 No alias (at2g22070 : 634.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_8319g0010 No alias (at4g02750 : 466.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_9354530g0010 No alias (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00013800-RA No alias (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00046650-RA No alias (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Pp1s543_6V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.05 Orthogroups_2024-Update
Seita.7G324400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen09g004810 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 184
IPR002885 Pentatricopeptide_repeat 5 52
IPR002885 Pentatricopeptide_repeat 237 285
IPR002885 Pentatricopeptide_repeat 377 406
IPR032867 DYW_dom 411 535
IPR002885 Pentatricopeptide_repeat 306 336
No external refs found!