PSME_00039252-RA

Description : (q5qm99|rl37a_orysa : 183.0) 60S ribosomal protein L37a - Oryza sativa (Rice) & (at3g60245 : 176.0) Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae (InterPro:IPR002674), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G10950.1); Has 1052 Blast hits to 1052 proteins in 365 species: Archae - 290; Bacteria - 0; Metazoa - 325; Fungi - 120; Plants - 130; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description)

Gene families : OG_42_0001690 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001690_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00039252-RA
Cluster	HCCA clusters: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
227221	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
Bradi2g17040	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Bradi2g46580	No alias	Zinc-binding ribosomal protein family protein	0.07	Orthogroups_2024-Update
Brara.D00174.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Brara.G01877.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.I04155.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Cre06.g257150	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
Glyma.05G067400	No alias	Zinc-binding ribosomal protein family protein	0.05	Orthogroups_2024-Update
Glyma.07G118600	No alias	Zinc-binding ribosomal protein family protein	0.02	Orthogroups_2024-Update
Glyma.11G039200	No alias	Zinc-binding ribosomal protein family protein	0.05	Orthogroups_2024-Update
Glyma.17G149600	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G062590.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
HORVU7Hr1G081910.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
MA_4732g0010	No alias	(q5qm99\|rl37a_orysa : 129.0) 60S ribosomal protein L37a...	0.04	Orthogroups_2024-Update
Mp5g09590.1	No alias	component RPL37a of LSU proteome component	0.02	Orthogroups_2024-Update
Potri.001G149300	No alias	Zinc-binding ribosomal protein family protein	0.04	Orthogroups_2024-Update
Pp1s1_348V6	No alias	60s ribosomal protein l37a	0.03	Orthogroups_2024-Update
Pp1s200_49V6	No alias	60s ribosomal protein l37a	0.09	Orthogroups_2024-Update
Pp1s2_289V6	No alias	60s ribosomal protein l37a	0.07	Orthogroups_2024-Update
Pp1s39_288V6	No alias	60s ribosomal protein l37a	0.1	Orthogroups_2024-Update
Pp1s76_74V6	No alias	60s ribosomal protein l37a	0.05	Orthogroups_2024-Update
Seita.5G271000.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Seita.7G069200.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.004G045400.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.006G047400.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.009G227400.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Solyc08g007140	No alias	60S ribosomal protein L37a (AHRD V3.3 *** RL37A_GOSHI)	0.04	Orthogroups_2024-Update
Solyc08g077720	No alias	60S ribosomal protein L37a (AHRD V3.3 *** RL37A_GOSHI)	0.04	Orthogroups_2024-Update
Sopen08g003090	No alias	Ribosomal L37ae protein family	0.05	Orthogroups_2024-Update
Sopen08g026220	No alias	Ribosomal L37ae protein family	0.04	Orthogroups_2024-Update
evm.model.tig00000718.64	No alias	(q9xhe4\|rl37a_goshi : 145.0) 60S ribosomal protein L37a...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Predicted GO
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004359	glutaminase activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	IEP	Predicted GO
MF	GO:0004615	phosphomannomutase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005743	mitochondrial inner membrane	IEP	Predicted GO
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Predicted GO
CC	GO:0005839	proteasome core complex	IEP	Predicted GO
CC	GO:0005875	microtubule associated complex	IEP	Predicted GO
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predicted GO
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006450	regulation of translational fidelity	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006508	proteolysis	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006766	vitamin metabolic process	IEP	Predicted GO
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predicted GO
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
BP	GO:0009110	vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predicted GO
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Predicted GO
BP	GO:0009298	GDP-mannose biosynthetic process	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predicted GO
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019673	GDP-mannose metabolic process	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
CC	GO:0019866	organelle inner membrane	IEP	Predicted GO
BP	GO:0022904	respiratory electron transport chain	IEP	Predicted GO
CC	GO:0030286	dynein complex	IEP	Predicted GO
CC	GO:0030880	RNA polymerase complex	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0042816	vitamin B6 metabolic process	IEP	Predicted GO
BP	GO:0042819	vitamin B6 biosynthetic process	IEP	Predicted GO
BP	GO:0042822	pyridoxal phosphate metabolic process	IEP	Predicted GO
BP	GO:0042823	pyridoxal phosphate biosynthetic process	IEP	Predicted GO
CC	GO:0044437	vacuolar part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045275	respiratory chain complex III	IEP	Predicted GO
BP	GO:0046184	aldehyde biosynthetic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Predicted GO
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0070003	threonine-type peptidase activity	IEP	Predicted GO
CC	GO:0070069	cytochrome complex	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO
CC	GO:1902494	catalytic complex	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO
CC	GO:1990234	transferase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002674	Ribosomal_L37ae	4	88

External Links

No external refs found!

PSME_00039252-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation