1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00046428-RA

PSME_00046428-RA


Description : (at1g15950 : 364.0) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). & (p51110|dfra_vitvi : 108.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Vitis vinifera (Grape) & (reliability: 728.0) & (original description: no original description)


Gene families : OG_42_0000056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00046428-RA
Cluster HCCA clusters: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
141996 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Orthogroups_2024-Update
172432 No alias dihydroflavonol 4-reductase-like1 0.02 Orthogroups_2024-Update
227659 No alias cinnamoyl coa reductase 1 0.02 Orthogroups_2024-Update
At1g09480 No alias NAD(P)-binding Rossmann-fold superfamily protein... 0.02 Orthogroups_2024-Update
At1g68540 No alias TKPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178W2A9] 0.02 Orthogroups_2024-Update
At5g19440 No alias At5g19440 [Source:UniProtKB/TrEMBL;Acc:Q29Q34] 0.03 Orthogroups_2024-Update
At5g42800 No alias Dihydroflavonol reductase [Source:UniProtKB/TrEMBL;Acc:B1GV15] 0.02 Orthogroups_2024-Update
Bradi1g35730 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g44480 No alias dihydroflavonol 4-reductase 0.05 Orthogroups_2024-Update
Bradi3g54960 No alias cinnamoyl coa reductase 1 0.02 Orthogroups_2024-Update
Bradi4g33886 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.01 Orthogroups_2024-Update
Brara.B03104.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02044.1 No alias phaseic acid reductase *(CRL1/2) 0.04 Orthogroups_2024-Update
Brara.F01108.1 No alias cinnamoyl-CoA reductase *(CCR) 0.04 Orthogroups_2024-Update
Brara.G03446.1 No alias phaseic acid reductase *(CRL1/2) 0.03 Orthogroups_2024-Update
Brara.G03698.1 No alias cinnamoyl-CoA reductase *(CCR) 0.03 Orthogroups_2024-Update
Brara.H01651.1 No alias tetraketide alpha-pyrone reductase *(TKPR) 0.03 Orthogroups_2024-Update
Brara.J01643.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre12.g547800 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G107076 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G026300 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G369800 No alias cinnamoyl coa reductase 0.02 Orthogroups_2024-Update
Glyma.15G003600 No alias cinnamoyl coa reductase 1 0.03 Orthogroups_2024-Update
HORVU4Hr1G012470.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G085100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G050940.1 No alias cinnamoyl-CoA reductase *(CCR) 0.03 Orthogroups_2024-Update
HORVU5Hr1G065330.12 No alias cinnamoyl-CoA reductase *(CCR) 0.04 Orthogroups_2024-Update
HORVU5Hr1G073800.2 No alias phaseic acid reductase *(CRL1/2) 0.02 Orthogroups_2024-Update
HORVU7Hr1G051520.11 No alias tetraketide alpha-pyrone reductase *(TKPR) 0.02 Orthogroups_2024-Update
LOC_Os01g61230 No alias dihydroflavonol-4-reductase, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g41810 No alias reductase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g25150 No alias cinnamoyl-CoA reductase, putative, expressed 0.02 Orthogroups_2024-Update
MA_9439348g0010 No alias (at1g51410 : 185.0) similar to Eucalyptus gunnii alcohol... 0.03 Orthogroups_2024-Update
MA_9446650g0010 No alias (at1g15950 : 463.0) Encodes a cinnamoyl CoA reductase.... 0.05 Orthogroups_2024-Update
PSME_00012000-RA No alias (p51108|dfra_maize : 262.0) Dihydroflavonol-4-reductase... 0.05 Orthogroups_2024-Update
PSME_00041206-RA No alias (at1g80820 : 401.0) Encodes an cinnamoyl CoA reductase... 0.03 Orthogroups_2024-Update
Potri.001G256400 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.06 Orthogroups_2024-Update
Potri.005G257700 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G125400 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Orthogroups_2024-Update
Pp1s39_342V6 No alias cinnamoyl- reductase 0.03 Orthogroups_2024-Update
Seita.2G131500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G212500.1 No alias phaseic acid reductase *(CRL1/2) 0.06 Orthogroups_2024-Update
Seita.9G038000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G250100.2 No alias phaseic acid reductase *(CRL1/2) 0.02 Orthogroups_2024-Update
Sobic.003G342100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G050200.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 Orthogroups_2024-Update
Sobic.004G065600.1 No alias cinnamoyl-CoA reductase *(CCR) 0.03 Orthogroups_2024-Update
Sobic.004G130800.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G206000.1 No alias tetraketide alpha-pyrone reductase *(TKPR) 0.02 Orthogroups_2024-Update
Solyc01g102730 No alias Cinnamoyl-CoA reductase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc02g085020 No alias dihydroflavonol 4-reductase 0.03 Orthogroups_2024-Update
Sopen01g045150 No alias NAD dependent epimerase/dehydratase family 0.02 Orthogroups_2024-Update
Sopen02g029720 No alias NAD dependent epimerase/dehydratase family 0.04 Orthogroups_2024-Update
evm.model.contig_2031.3 No alias (at1g09510 : 132.0) similar to Eucalyptus gunnii alcohol... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0050662 coenzyme binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 65 192
IPR001509 Epimerase_deHydtase 13 55
No external refs found!