PSME_00048165-RA

Description : no hits & (original description: no original description)

Gene families : OG_42_0002853 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002853_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00048165-RA
Cluster	HCCA clusters: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
227173	No alias	Ribosomal protein S30 family protein	0.07	Orthogroups_2024-Update
At2g19750	No alias	40S ribosomal protein S30...	0.05	Orthogroups_2024-Update
At4g29390	No alias	40S ribosomal protein S30...	0.06	Orthogroups_2024-Update
Bradi1g48060	No alias	Ribosomal protein S30 family protein	0.02	Orthogroups_2024-Update
Brara.A00791.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Brara.C01230.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.I04721.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.J01095.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Cre16.g666301	No alias	Ribosomal protein S30 family protein	0.18	Orthogroups_2024-Update
GRMZM2G054012	No alias	Ribosomal protein S30 family protein	0.08	Orthogroups_2024-Update
Glyma.01G209400	No alias	Ribosomal protein S30 family protein	0.02	Orthogroups_2024-Update
HORVU7Hr1G027760.1	No alias	component *(eS30) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
LOC_Os06g07580	No alias	expressed protein	0.04	Orthogroups_2024-Update
MA_10432727g0010	No alias	(at5g56670 : 97.4) Ribosomal protein S30 family protein;...	0.05	Orthogroups_2024-Update
Mp2g24290.1	No alias	component RPS30 of SSU proteome	0.04	Orthogroups_2024-Update
Mp8g09080.1	No alias	component RPS30 of SSU proteome	0.02	Orthogroups_2024-Update
Potri.012G086600	No alias	Ribosomal protein S30 family protein	0.07	Orthogroups_2024-Update
Potri.014G147200	No alias	Ribosomal protein S30 family protein	0.06	Orthogroups_2024-Update
Potri.015G084700	No alias	Ribosomal protein S30 family protein	0.07	Orthogroups_2024-Update
Pp1s22_155V6	No alias	40s ribosomal protein s30	0.14	Orthogroups_2024-Update
Pp1s22_171V6	No alias	40s ribosomal protein s30	0.11	Orthogroups_2024-Update
Pp1s283_53V6	No alias	40s ribosomal protein s30	0.17	Orthogroups_2024-Update
Pp1s97_259V6	No alias	40s ribosomal protein s30	0.14	Orthogroups_2024-Update
Solyc08g076340	No alias	40S ribosomal protein S30 (AHRD V3.3 *** W9QWZ6_9ROSA)	0.13	Orthogroups_2024-Update
Solyc12g008700	No alias	peroxisomal ABC transporter 1 (AHRD V3.3 --* AT4G39850.4)	0.14	Orthogroups_2024-Update
evm.model.tig00001003.33	No alias	no hits & (original description: no original description)	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Predicted GO
CC	GO:0005787	signal peptidase complex	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006465	signal peptide processing	IEP	Predicted GO
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predicted GO
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
CC	GO:0030964	NADH dehydrogenase complex	IEP	Predicted GO
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
BP	GO:0034227	tRNA thio-modification	IEP	Predicted GO
BP	GO:0034311	diol metabolic process	IEP	Predicted GO
BP	GO:0034312	diol biosynthetic process	IEP	Predicted GO
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
CC	GO:0044437	vacuolar part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045271	respiratory chain complex I	IEP	Predicted GO
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO
CC	GO:1902494	catalytic complex	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO
CC	GO:1905368	peptidase complex	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO
CC	GO:1990234	transferase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006846	Ribosomal_S30	3	55

External Links

No external refs found!

PSME_00048165-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation