PSME_00053840-RA

Description : (q9mav7|rl31_pangi : 196.0) 60S ribosomal protein L31 - Panax ginseng (Korean ginseng) & (at2g19740 : 194.0) Ribosomal protein L31e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054), Ribosomal protein L31e, conserved site (InterPro:IPR020052); BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT5G56710.1); Has 1076 Blast hits to 1076 proteins in 345 species: Archae - 133; Bacteria - 2; Metazoa - 458; Fungi - 144; Plants - 170; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description)

Gene families : OG_42_0001913 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001913_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00053840-RA
Cluster	HCCA clusters: Cluster_169

Target	Alias	Description	ECC score	Gene Family Method
268515	No alias	Ribosomal protein L31e family protein	0.06	Orthogroups_2024-Update
Bradi3g39870	No alias	Ribosomal protein L31e family protein	0.02	Orthogroups_2024-Update
Bradi3g53460	No alias	Ribosomal protein L31e family protein	0.04	Orthogroups_2024-Update
Brara.B01256.1	No alias	component *(eL31) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Cre12.g489153	No alias	Ribosomal protein L31e family protein	0.04	Orthogroups_2024-Update
Glyma.01G004300	No alias	Ribosomal protein L31e family protein	0.03	Orthogroups_2024-Update
Glyma.07G127500	No alias	Ribosomal protein L31e family protein	0.06	Orthogroups_2024-Update
Glyma.08G030900	No alias	Ribosomal protein L31e family protein	0.03	Orthogroups_2024-Update
HORVU6Hr1G070670.1	No alias	component *(eL31) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
MA_8286g0010	No alias	(q9mav7\|rl31_pangi : 193.0) 60S ribosomal protein L31 -...	0.03	Orthogroups_2024-Update
Mp7g18320.1	No alias	component RPL31 of LSU proteome component	0.05	Orthogroups_2024-Update
Potri.001G269600	No alias	Ribosomal protein L31e family protein	0.06	Orthogroups_2024-Update
Potri.009G064100	No alias	Ribosomal protein L31e family protein	0.03	Orthogroups_2024-Update
Potri.018G070100	No alias	Ribosomal protein L31e family protein	0.03	Orthogroups_2024-Update
Pp1s28_306V6	No alias	60s ribosomal protein l31a	0.02	Orthogroups_2024-Update
Pp1s30_365V6	No alias	60s ribosomal protein l31a	0.06	Orthogroups_2024-Update
Pp1s50_89V6	No alias	60s ribosomal protein l31a	0.05	Orthogroups_2024-Update
Pp1s58_106V6	No alias	60s ribosomal protein l31a	0.05	Orthogroups_2024-Update
Pp1s79_255V6	No alias	60s ribosomal protein l31a	0.05	Orthogroups_2024-Update
Seita.1G297300.1	No alias	component *(eL31) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.4G139300.1	No alias	component *(eL31) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.004G259700.1	No alias	component *(eL31) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.007G211700.1	No alias	component *(eL31) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Solyc12g008720	No alias	60S ribosomal protein L31 (AHRD V3.3 *** W9QLF2_9ROSA)	0.04	Orthogroups_2024-Update
Sopen12g003650	No alias	Ribosomal protein L31e	0.04	Orthogroups_2024-Update
evm.model.contig_477.12	No alias	(q9mav7\|rl31_pangi : 120.0) 60S ribosomal protein L31 -...	0.03	Orthogroups_2024-Update
evm.model.tig00020703.20	No alias	(q9mav7\|rl31_pangi : 155.0) 60S ribosomal protein L31 -...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Predicted GO
CC	GO:0005787	signal peptidase complex	IEP	Predicted GO
CC	GO:0005839	proteasome core complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006465	signal peptide processing	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predicted GO
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
CC	GO:0030964	NADH dehydrogenase complex	IEP	Predicted GO
MF	GO:0030975	thiamine binding	IEP	Predicted GO
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
BP	GO:0034227	tRNA thio-modification	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044437	vacuolar part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045271	respiratory chain complex I	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
MF	GO:0070003	threonine-type peptidase activity	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO
CC	GO:1902494	catalytic complex	IEP	Predicted GO
CC	GO:1905368	peptidase complex	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000054	Ribosomal_L31e	30	111

External Links

No external refs found!

PSME_00053840-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation