1. Home
  2. Species
  3. Brachypodium distachyon
  4. Sequence
  5. Bradi1g21177

Bradi1g21177


Description : RNA polymerase II transcription mediators


Gene families : OG_42_0004166 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004166_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g21177
Cluster HCCA clusters: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
441953 No alias RNA polymerase II transcription mediators 0.04 Orthogroups_2024-Update
At4g00450 No alias Mediator of RNA polymerase II transcription subunit 12... 0.03 Orthogroups_2024-Update
Brara.K01856.1 No alias component *(MED12) of kinase module of MEDIATOR... 0.03 Orthogroups_2024-Update
GRMZM2G114459 No alias RNA polymerase II transcription mediators 0.04 Orthogroups_2024-Update
Glyma.03G009200 No alias RNA polymerase II transcription mediators 0.03 Orthogroups_2024-Update
Glyma.07G070700 No alias RNA polymerase II transcription mediators 0.03 Orthogroups_2024-Update
Glyma.18G232900 No alias RNA polymerase II transcription mediators 0.07 Orthogroups_2024-Update
MA_65214g0010 No alias (at4g00450 : 142.0) Encodes the Arabidopsis homolog of... 0.03 Orthogroups_2024-Update
MpVg00710.12 No alias No annotation 0.07 Orthogroups_2024-Update
Pp1s16_265V6 No alias F5I10.24; expressed protein [Arabidopsis thaliana] 0.06 Orthogroups_2024-Update
Seita.9G576200.1 No alias component *(MED12) of kinase module of MEDIATOR... 0.1 Orthogroups_2024-Update
Sobic.001G540400.2 No alias component *(MED12) of kinase module of MEDIATOR... 0.07 Orthogroups_2024-Update
Solyc01g094620 No alias Mediator of RNA polymerase II transcription subunit 12... 0.04 Orthogroups_2024-Update
Sopen01g038430 No alias Transcription mediator complex subunit Med12 0.05 Orthogroups_2024-Update
evm.model.tig00000042.125 No alias (at4g00450 : 87.8) Encodes the Arabidopsis homolog of... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEA InterProScan predictions
BP GO:0006357 regulation of transcription by RNA polymerase II IEA InterProScan predictions
CC GO:0016592 mediator complex IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR019035 Mediator_Med12 127 187
No external refs found!