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  5. Bradi1g22717

Bradi1g22717


Description : actin binding


Gene families : OG_42_0000436 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000436_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g22717
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G215100 No alias actin binding 0.04 Orthogroups_2024-Update
Kfl00097_0370 kfl00097_0370_v1.1 (at5g07740 : 95.1) actin binding; FUNCTIONS IN: actin... 0.01 Orthogroups_2024-Update
Kfl00111_0310 kfl00111_0310_v1.1 (at1g31810 : 372.0) Encodes the Type II Arabidopsis... 0.02 Orthogroups_2024-Update
MA_4962g0010 No alias (at5g58160 : 520.0) actin binding; FUNCTIONS IN: actin... 0.02 Orthogroups_2024-Update
Seita.5G078800.1 No alias group-II formin actin filament elongation factor 0.04 Orthogroups_2024-Update
Seita.6G105700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G146100.1 No alias group-II formin actin filament elongation factor 0.05 Orthogroups_2024-Update
evm.model.contig_2285.5 No alias (at1g31810 : 118.0) Encodes the Type II Arabidopsis... 0.02 Orthogroups_2024-Update
evm.model.contig_2495.1 No alias (at2g25050 : 107.0) Actin-binding FH2 (Formin Homology)... 0.01 Orthogroups_2024-Update
evm.model.tig00001336.15 No alias (at1g31810 : 151.0) Encodes the Type II Arabidopsis... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR015425 FH2_Formin 1176 1543
IPR014020 Tensin_C2-dom 200 335
No external refs found!