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  5. Bradi1g33130

Bradi1g33130


Description : NUP50 (Nucleoporin 50 kDa) protein


Gene families : OG_42_0004029 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004029_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g33130
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre15.g641000 No alias NUP50 (Nucleoporin 50 kDa) protein 0.01 Orthogroups_2024-Update
Mp5g18610.1 No alias NUP50 nucleoporin of nuclear pore complex 0.01 Orthogroups_2024-Update
Pp1s1_845V6 No alias No description available 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA InterProScan predictions
BP GO:0046907 intracellular transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0046039 GTP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 24 81
IPR000156 Ran_bind_dom 321 436
No external refs found!