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  5. Bradi2g08900

Bradi2g08900


Description : seryl-tRNA synthetase / serine--tRNA ligase


Gene families : OG_42_0003118 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g08900
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
At5g27470 No alias Serine--tRNA ligase, cytoplasmic... 0.03 Orthogroups_2024-Update
Cre03.g189400 No alias seryl-tRNA synthetase / serine--tRNA ligase 0.02 Orthogroups_2024-Update
HORVU4Hr1G070630.2 No alias serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond 0.03 Orthogroups_2024-Update
HORVU6Hr1G080800.2 No alias serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond 0.05 Orthogroups_2024-Update
Potri.005G094400 No alias seryl-tRNA synthetase / serine--tRNA ligase 0.02 Orthogroups_2024-Update
Pp1s142_120V6 No alias seryl-trna synthetase 0.04 Orthogroups_2024-Update
Seita.9G503900.1 No alias serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond 0.08 Orthogroups_2024-Update
Sobic.001G468600.1 No alias serine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond 0.03 Orthogroups_2024-Update
Solyc01g098880 No alias Seryl-tRNA synthetase, putative (AHRD V3.3 *** B9RKX9_RICCO) 0.03 Orthogroups_2024-Update
Sopen01g042420 No alias tRNA synthetase class II core domain (G, H, P, S and T) 0.02 Orthogroups_2024-Update
evm.model.contig_2110.1 No alias (at5g27470 : 511.0) seryl-tRNA synthetase / serine--tRNA... 0.02 Orthogroups_2024-Update
evm.model.tig00020610.57 No alias (o81983|sys_helan : 467.0) Seryl-tRNA synthetase (EC... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA InterProScan predictions
MF GO:0004812 aminoacyl-tRNA ligase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006418 tRNA aminoacylation for protein translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003972 RNA ligase (ATP) activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008452 RNA ligase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002314 aa-tRNA-synt_IIb 221 408
IPR015866 Ser-tRNA-synth_1_N 1 112
No external refs found!