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Description : Topoisomerase II-associated protein PAT1
Gene families : OG_42_0001618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001618_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi2g20220 | |
| Cluster | HCCA clusters: Cluster_1 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.E01726.1 | No alias | mRNA decay factor *(PAT1) | 0.02 | Orthogroups_2024-Update | |
| Cre06.g278203 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G118098 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
| Glyma.08G171800 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G255200 | No alias | Function unknown | 0.04 | Orthogroups_2024-Update | |
| Kfl00377_0140 | kfl00377_0140_v1.1 | (at1g79090 : 251.0) FUNCTIONS IN: molecular_function... | 0.01 | Orthogroups_2024-Update | |
| Mp4g14040.1 | No alias | mRNA decay factor (PAT1) | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G309200.1 | No alias | mRNA decay factor *(PAT1) | 0.01 | Orthogroups_2024-Update | |
| Sopen12g008080 | No alias | Topoisomerase II-associated protein PAT1 | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00021357.9 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004386 | helicase activity | IEP | Predicted GO |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005777 | peroxisome | IEP | Predicted GO |
| BP | GO:0006606 | protein import into nucleus | IEP | Predicted GO |
| BP | GO:0006810 | transport | IEP | Predicted GO |
| BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Predicted GO |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predicted GO |
| BP | GO:0007031 | peroxisome organization | IEP | Predicted GO |
| BP | GO:0008104 | protein localization | IEP | Predicted GO |
| MF | GO:0008289 | lipid binding | IEP | Predicted GO |
| MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
| BP | GO:0015031 | protein transport | IEP | Predicted GO |
| BP | GO:0015833 | peptide transport | IEP | Predicted GO |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Predicted GO |
| CC | GO:0016592 | mediator complex | IEP | Predicted GO |
| BP | GO:0017038 | protein import | IEP | Predicted GO |
| BP | GO:0022406 | membrane docking | IEP | Predicted GO |
| CC | GO:0030117 | membrane coat | IEP | Predicted GO |
| CC | GO:0030119 | AP-type membrane coat adaptor complex | IEP | Predicted GO |
| CC | GO:0030131 | clathrin adaptor complex | IEP | Predicted GO |
| MF | GO:0031683 | G-protein beta/gamma-subunit complex binding | IEP | Predicted GO |
| BP | GO:0033036 | macromolecule localization | IEP | Predicted GO |
| BP | GO:0034504 | protein localization to nucleus | IEP | Predicted GO |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | Predicted GO |
| CC | GO:0042579 | microbody | IEP | Predicted GO |
| BP | GO:0042886 | amide transport | IEP | Predicted GO |
| BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0045184 | establishment of protein localization | IEP | Predicted GO |
| BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
| BP | GO:0048278 | vesicle docking | IEP | Predicted GO |
| BP | GO:0051169 | nuclear transport | IEP | Predicted GO |
| BP | GO:0051170 | import into nucleus | IEP | Predicted GO |
| BP | GO:0051179 | localization | IEP | Predicted GO |
| BP | GO:0051234 | establishment of localization | IEP | Predicted GO |
| BP | GO:0051640 | organelle localization | IEP | Predicted GO |
| BP | GO:0051641 | cellular localization | IEP | Predicted GO |
| BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Predicted GO |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
| BP | GO:0071702 | organic substance transport | IEP | Predicted GO |
| BP | GO:0071705 | nitrogen compound transport | IEP | Predicted GO |
| CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
| BP | GO:0140029 | exocytic process | IEP | Predicted GO |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | Predicted GO |
| MF | GO:0140104 | molecular carrier activity | IEP | Predicted GO |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |