Bradi2g59480

Description : auxin response factor 2

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g59480
Cluster	HCCA clusters: Cluster_184

Target	Alias	Description	ECC score	Gene Family Method
424114	No alias	auxin response factor 6	0.04	Orthogroups_2024-Update
Bradi1g32547	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Bradi3g03407	No alias	Transcriptional factor B3 family protein /...	0.05	Orthogroups_2024-Update
Brara.A01401.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.J01551.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
GRMZM2G160005	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.06G164900	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Glyma.08G008100	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.13G174000	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Potri.006G077800	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Seita.3G321500.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G240600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Sobic.010G253300.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Solyc12g006350	No alias	Auxin response factor (AHRD V3.3 - M1CTA3_SOLTU)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0016567	protein ubiquitination	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	127	228
IPR010525	Auxin_resp	253	334
IPR033389	AUX/IAA_dom	675	778

External Links

No external refs found!

Bradi2g59480

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation