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  5. Bradi3g13460

Bradi3g13460


Description : ATP-dependent RNA helicase, putative


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g13460
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
233605 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
A4A49_00699 No alias pre-mrna-splicing factor atp-dependent rna helicase deah7 0.03 Orthogroups_2024-Update
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.04 Orthogroups_2024-Update
At3g26560 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Orthogroups_2024-Update
Brara.B00468.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Brara.C02356.1 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Orthogroups_2024-Update
Brara.E01777.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
Cre03.g182950 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Cre07.g349100 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
GRMZM2G029258 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
Glyma.01G142700 No alias RNA helicase family protein 0.05 Orthogroups_2024-Update
Glyma.02G119000 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.06G201700 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.17G256200 No alias ATP-dependent RNA helicase, putative 0.04 Orthogroups_2024-Update
HORVU0Hr1G007860.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update
Kfl00085_0100 kfl00085_0100_v1.1 (at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
Kfl00433_0080 kfl00433_0080_v1.1 (at1g33390 : 423.0) Over-expression of this gene results... 0.03 Orthogroups_2024-Update
LOC_Os02g50370 No alias helicase domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g24760 No alias ATP-dependent RNA helicase, putative, expressed 0.02 Orthogroups_2024-Update
MA_629782g0010 No alias (at5g13010 : 617.0) embryo defective 3011 (EMB3011);... 0.04 Orthogroups_2024-Update
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Orthogroups_2024-Update
Mp4g04560.1 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Mp7g03460.1 No alias RNA helicase (Prp16) 0.02 Orthogroups_2024-Update
PSME_00016394-RA No alias (at3g26560 : 1512.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
Potri.010G057200 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Potri.010G172500 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Potri.012G034200 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
Potri.015G008700 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.03 Orthogroups_2024-Update
Seita.3G152600.1 No alias RNA helicase *(Prp2) 0.03 Orthogroups_2024-Update
Seita.4G158300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G109400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g095710 No alias RNA helicase DEAH-box3 0.03 Orthogroups_2024-Update
evm.model.tig00000842.2 No alias (at3g26560 : 568.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
evm.model.tig00000984.27 No alias (at1g32490 : 711.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 988 1076
IPR003029 S1_domain 293 361
IPR011709 DUF1605 1134 1209
IPR001650 Helicase_C 794 926
IPR011545 DEAD/DEAH_box_helicase_dom 602 752
No external refs found!