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  5. Bradi3g33860

Bradi3g33860


Description : TCP-1/cpn60 chaperonin family protein


Gene families : OG_42_0004622 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004622_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g33860
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Brara.G00906.1 No alias subunit epsilon *(CCT5) of CCT chaperonin folding complex 0.04 Orthogroups_2024-Update
Brara.H02077.1 No alias subunit epsilon *(CCT5) of CCT chaperonin folding complex 0.02 Orthogroups_2024-Update
Brara.I03043.1 No alias subunit epsilon *(CCT5) of CCT chaperonin folding complex 0.04 Orthogroups_2024-Update
Cre03.g156750 No alias TCP-1/cpn60 chaperonin family protein 0.05 Orthogroups_2024-Update
Glyma.11G244700 No alias TCP-1/cpn60 chaperonin family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G088080.1 No alias subunit epsilon *(CCT5) of CCT chaperonin folding complex 0.04 Orthogroups_2024-Update
Kfl00106_0170 kfl00106_0170_v1.1 (at1g24510 : 837.0) TCP-1/cpn60 chaperonin family... 0.03 Orthogroups_2024-Update
MA_10435597g0010 No alias (at1g24510 : 865.0) TCP-1/cpn60 chaperonin family... 0.03 Orthogroups_2024-Update
Mp7g17510.1 No alias CCT5 subunit epsilon of CCT chaperonin folding complex 0.04 Orthogroups_2024-Update
PSME_00031168-RA No alias (at1g24510 : 909.0) TCP-1/cpn60 chaperonin family... 0.02 Orthogroups_2024-Update
Potri.008G182300 No alias TCP-1/cpn60 chaperonin family protein 0.03 Orthogroups_2024-Update
Seita.4G239100.1 No alias subunit epsilon *(CCT5) of CCT chaperonin folding complex 0.09 Orthogroups_2024-Update
Sobic.002G014400.1 No alias subunit epsilon *(CCT5) of CCT chaperonin folding complex 0.05 Orthogroups_2024-Update
Solyc05g013990 No alias T-complex protein 1 (AHRD V3.3 *** B9HTF6_POPTR) 0.07 Orthogroups_2024-Update
Sopen05g008940 No alias TCP-1/cpn60 chaperonin family 0.02 Orthogroups_2024-Update
evm.model.contig_650.4 No alias (at1g24510 : 706.0) TCP-1/cpn60 chaperonin family... 0.02 Orthogroups_2024-Update
evm.model.tig00000571.47 No alias (at1g24510 : 734.0) TCP-1/cpn60 chaperonin family... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000726 non-recombinational repair IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 40 531
No external refs found!