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  5. Bradi4g07997

Bradi4g07997


Description : ubiquitin-protein ligase 1


Gene families : OG_42_0001888 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g07997
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
154179 No alias ubiquitin-protein ligase 1 0.09 Orthogroups_2024-Update
At1g70320 No alias E3 ubiquitin-protein ligase UPL2... 0.04 Orthogroups_2024-Update
Cre01.g012450 No alias ubiquitin-protein ligase 1 0.05 Orthogroups_2024-Update
GRMZM2G331368 No alias ubiquitin-protein ligase 1 0.06 Orthogroups_2024-Update
GRMZM2G411536 No alias ubiquitin-protein ligase 2 0.04 Orthogroups_2024-Update
Glyma.02G216000 No alias ubiquitin-protein ligase 1 0.14 Orthogroups_2024-Update
Glyma.04G096900 No alias ubiquitin-protein ligase 1 0.12 Orthogroups_2024-Update
Glyma.05G133100 No alias ubiquitin-protein ligase 1 0.07 Orthogroups_2024-Update
Glyma.06G098700 No alias ubiquitin-protein ligase 1 0.14 Orthogroups_2024-Update
Glyma.08G087600 No alias ubiquitin-protein ligase 1 0.12 Orthogroups_2024-Update
Glyma.14G183000 No alias ubiquitin-protein ligase 2 0.13 Orthogroups_2024-Update
HORVU5Hr1G033930.8 No alias E3 ubiquitin ligase *(UPL1) 0.08 Orthogroups_2024-Update
Kfl00780_0030 kfl00780_0030_v1.1 (at1g55860 : 726.0) encodes a ubiquitin-protein ligase... 0.09 Orthogroups_2024-Update
LOC_Os12g24080 No alias HECT-domain domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_20049g0010 No alias (at1g55860 : 1461.0) encodes a ubiquitin-protein ligase... 0.08 Orthogroups_2024-Update
MA_7295g0020 No alias (at1g70320 : 866.0) encodes a ubiquitin-protein... 0.1 Orthogroups_2024-Update
Mp4g21620.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.03 Orthogroups_2024-Update
PSME_00003462-RA No alias (at1g55860 : 1890.0) encodes a ubiquitin-protein ligase... 0.05 Orthogroups_2024-Update
PSME_00024428-RA No alias (at1g55860 : 1240.0) encodes a ubiquitin-protein ligase... 0.07 Orthogroups_2024-Update
Potri.001G368600 No alias ubiquitin-protein ligase 1 0.03 Orthogroups_2024-Update
Potri.002G110500 No alias ubiquitin-protein ligase 2 0.03 Orthogroups_2024-Update
Pp1s138_130V6 No alias e3 ubiquitin protein ligase 0.12 Orthogroups_2024-Update
Pp1s268_65V6 No alias probable ubiquitin ligase tom1p fragment 0.02 Orthogroups_2024-Update
Pp1s42_128V6 No alias e3 ubiquitin protein ligase 0.11 Orthogroups_2024-Update
Seita.2G152700.1 No alias E3 ubiquitin ligase *(UPL1) 0.14 Orthogroups_2024-Update
Seita.3G302600.1 No alias E3 ubiquitin ligase *(UPL1) 0.12 Orthogroups_2024-Update
Sobic.002G147600.1 No alias E3 ubiquitin ligase *(UPL1) 0.1 Orthogroups_2024-Update
Sobic.008G092600.1 No alias E3 ubiquitin ligase *(UPL1) 0.12 Orthogroups_2024-Update
Solyc04g076620 No alias E3 ubiquitin-protein ligase UPL1-like protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen04g030340 No alias HECT-domain (ubiquitin-transferase) 0.06 Orthogroups_2024-Update
evm.model.contig_2051.21 No alias (at1g55860 : 460.0) encodes a ubiquitin-protein ligase... 0.03 Orthogroups_2024-Update
evm.model.contig_2081.3 No alias (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR010309 E3_Ub_ligase_DUF908 109 413
IPR010314 E3_Ub_ligase_DUF913 476 801
IPR015940 UBA 1295 1331
IPR025527 DUF4414 2632 2663
IPR025527 DUF4414 2556 2583
IPR025527 DUF4414 2593 2625
IPR000569 HECT_dom 3325 3635
No external refs found!