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  5. Bradi4g19947

Bradi4g19947


Description : AMP-dependent synthetase and ligase family protein


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g19947
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
268211 No alias AMP-dependent synthetase and ligase family protein 0.02 Orthogroups_2024-Update
A4A49_31911 No alias 4-coumarate--coa ligase-like 6 0.03 Orthogroups_2024-Update
Brara.F01460.1 No alias OPC-8 0.02 Orthogroups_2024-Update
Brara.G02592.1 No alias p-coumarate 0.03 Orthogroups_2024-Update
GRMZM2G174732 No alias 4-coumarate:CoA ligase 2 0.03 Orthogroups_2024-Update
GRMZM2G328473 No alias AMP-dependent synthetase and ligase family protein 0.02 Orthogroups_2024-Update
Glyma.10G197900 No alias OPC-8:0 CoA ligase1 0.02 Orthogroups_2024-Update
Glyma.11G010500 No alias 4-coumarate:CoA ligase 3 0.03 Orthogroups_2024-Update
Glyma.15G001700 No alias 4-coumarate:CoA ligase 2 0.03 Orthogroups_2024-Update
HORVU4Hr1G081940.3 No alias OPC-8 0.02 Orthogroups_2024-Update
LOC_Os02g08100 No alias AMP-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g24530 No alias AMP-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g34790 No alias AMP-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_103893g0010 No alias (at1g20510 : 417.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
MA_5g0040 No alias (at4g05160 : 362.0) Encodes a peroxisomal protein... 0.02 Orthogroups_2024-Update
MA_633407g0010 No alias (o24145|4cl1_tobac : 656.0) 4-coumarate--CoA ligase 1... 0.03 Orthogroups_2024-Update
Pp1s20_346V6 No alias 4-coumarate: ligase 0.02 Orthogroups_2024-Update
Pp1s6_265V6 No alias acyl:coa ligase 0.02 Orthogroups_2024-Update
Pp1s96_224V6 No alias 4-coumarate:coenzyme a ligase 2 0.03 Orthogroups_2024-Update
Sobic.010G214900.1 No alias p-coumarate 0.04 Orthogroups_2024-Update
Solyc03g117870 No alias 4-coumarate--CoA ligase 0.02 Orthogroups_2024-Update
Solyc06g068650 No alias 4-coumarate--CoA ligase 0.02 Orthogroups_2024-Update
Sopen03g036780 No alias AMP-binding enzyme 0.02 Orthogroups_2024-Update
Sopen06g025930 No alias AMP-binding enzyme 0.02 Orthogroups_2024-Update
Sopen11g027760 No alias AMP-binding enzyme 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 50 442
IPR025110 AMP-bd_C 451 526
No external refs found!