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  5. Bradi4g21862

Bradi4g21862


Description : FAR1-related sequence 5


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g21862
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Brara.B03519.1 No alias FRS/FRF-type transcription factor 0.01 Orthogroups_2024-Update
Glyma.06G002400 No alias FAR1-related sequence 2 0.02 Orthogroups_2024-Update
Glyma.09G012900 No alias FAR1-related sequence 10 0.01 Orthogroups_2024-Update
HORVU3Hr1G097000.1 No alias FRS/FRF-type transcription factor 0.04 Orthogroups_2024-Update
LOC_Os05g30310 No alias transposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update
Potri.014G167000 No alias FAR1-related sequence 10 0.02 Orthogroups_2024-Update
Sobic.004G234766.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Solyc07g042600 No alias Transposon-like element Lyt2-2 DNA (AHRD V3.3 *** D5MNY6_SOLLC) 0.01 Orthogroups_2024-Update
Sopen00g012080 No alias MULE transposase domain 0.02 Orthogroups_2024-Update
Sopen03g036420 No alias FAR1 DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 234 328
IPR004330 FAR1_DNA_bnd_dom 21 112
No external refs found!