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  5. Bradi4g26877

Bradi4g26877


Description : Clathrin, heavy chain


Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g26877
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
149750 No alias Clathrin, heavy chain 0.02 Orthogroups_2024-Update
At3g11130 No alias Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6] 0.03 Orthogroups_2024-Update
Brara.E02956.1 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Cre02.g101400 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Glyma.01G179300 No alias Clathrin, heavy chain 0.03 Orthogroups_2024-Update
Glyma.02G258200 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Glyma.14G058300 No alias Clathrin, heavy chain 0.07 Orthogroups_2024-Update
Glyma.14G195400 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Glyma.18G026000 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
HORVU4Hr1G024710.12 No alias heavy chain of clathrin triskelion 0.03 Orthogroups_2024-Update
HORVU5Hr1G048010.1 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Kfl00232_0230 kfl00232_0230_v1.1 (at3g11130 : 2670.0) Clathrin, heavy chain; FUNCTIONS... 0.07 Orthogroups_2024-Update
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.05 Orthogroups_2024-Update
PSME_00001090-RA No alias (at3g11130 : 1091.0) Clathrin, heavy chain; FUNCTIONS... 0.03 Orthogroups_2024-Update
Pp1s147_10V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.09 Orthogroups_2024-Update
Pp1s7_102V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.09 Orthogroups_2024-Update
Seita.7G333500.1 No alias heavy chain of clathrin triskelion 0.1 Orthogroups_2024-Update
Seita.8G020100.1 No alias heavy chain of clathrin triskelion 0.11 Orthogroups_2024-Update
Sobic.005G003300.1 No alias heavy chain of clathrin triskelion 0.07 Orthogroups_2024-Update
Sobic.008G003700.1 No alias heavy chain of clathrin triskelion 0.1 Orthogroups_2024-Update
Solyc03g096000 No alias Clathrin heavy chain (AHRD V3.3 *** K4BJ22_SOLLC) 0.06 Orthogroups_2024-Update
Solyc05g052510 No alias Clathrin heavy chain (AHRD V3.3 *** K4C1T2_SOLLC) 0.04 Orthogroups_2024-Update
Solyc06g051310 No alias Clathrin heavy chain (AHRD V3.3 *** K4C5S4_SOLLC) 0.02 Orthogroups_2024-Update
Sopen03g026100 No alias Region in Clathrin and VPS 0.02 Orthogroups_2024-Update
Sopen05g031050 No alias Region in Clathrin and VPS 0.04 Orthogroups_2024-Update
evm.model.contig_2293.23 No alias (at3g08530 : 1151.0) Clathrin, heavy chain; FUNCTIONS... 0.01 Orthogroups_2024-Update
evm.model.tig00000042.11 No alias (at3g08530 : 1751.0) Clathrin, heavy chain; FUNCTIONS... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA InterProScan predictions
CC GO:0030132 clathrin coat of coated pit IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR015348 Clathrin_H-chain_linker_core 345 368
IPR022365 Clathrin_H-chain_propeller_rpt 209 248
IPR022365 Clathrin_H-chain_propeller_rpt 155 198
IPR000547 Clathrin_H-chain/VPS_repeat 994 1132
IPR000547 Clathrin_H-chain/VPS_repeat 851 976
IPR000547 Clathrin_H-chain/VPS_repeat 1290 1432
IPR000547 Clathrin_H-chain/VPS_repeat 1148 1282
IPR000547 Clathrin_H-chain/VPS_repeat 558 691
IPR000547 Clathrin_H-chain/VPS_repeat 1440 1580
IPR000547 Clathrin_H-chain/VPS_repeat 702 841
No external refs found!