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  5. Bradi4g35977

Bradi4g35977


Description : nucleic acid binding;zinc ion binding;DNA binding


Gene families : OG_42_0000694 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g35977
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AC210173.4_FG002 No alias nucleic acid binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
GRMZM2G078379 No alias nucleic acid binding;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
GRMZM2G408096 No alias nucleic acid binding;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
GRMZM2G443814 No alias DNA binding;zinc ion binding;nucleic acid... 0.06 Orthogroups_2024-Update
Glyma.04G008500 No alias nucleic acid binding;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
Glyma.06G008300 No alias nucleic acid binding;zinc ion binding;DNA binding 0.06 Orthogroups_2024-Update
HORVU4Hr1G089290.7 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
HORVU5Hr1G081290.3 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Kfl00155_0010 kfl00155_0010_v1.1 (at2g16485 : 234.0) nucleic acid binding;zinc ion... 0.03 Orthogroups_2024-Update
MA_116694g0010 No alias (at2g16485 : 270.0) nucleic acid binding;zinc ion... 0.02 Orthogroups_2024-Update
Mp4g08690.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.08 Orthogroups_2024-Update
Potri.007G016001 No alias DNA binding;zinc ion binding;nucleic acid... 0.05 Orthogroups_2024-Update
Seita.5G315200.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.09 Orthogroups_2024-Update
Seita.9G194100.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Seita.9G570500.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.07 Orthogroups_2024-Update
Sobic.003G293200.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.1 Orthogroups_2024-Update
Sobic.009G142000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g084510 No alias Zinc finger CCCH domain-containing protein 44 (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen02g029200 No alias Plus-3 domain 0.03 Orthogroups_2024-Update
Sopen11g024210 No alias Plus-3 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004343 Plus-3_dom 868 970
IPR003121 SWIB_MDM2_domain 728 801
IPR003169 GYF 1195 1235
No external refs found!