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  5. Bradi4g42780

Bradi4g42780


Description : PHD finger family protein


Gene families : OG_42_0001571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001571_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g42780
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G128176 No alias DNA binding;zinc ion binding;DNA binding 0.02 Orthogroups_2024-Update
Glyma.11G095800 No alias DNA binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
HORVU2Hr1G022310.4 No alias PHD finger transcription factor & component *(DDP) of... 0.04 Orthogroups_2024-Update
HORVU5Hr1G041230.9 No alias PHD finger transcription factor & component *(DDP) of... 0.03 Orthogroups_2024-Update
PSME_00009679-RA No alias (at5g12400 : 514.0) DNA binding;zinc ion binding;DNA... 0.02 Orthogroups_2024-Update
Pp1s311_65V6 No alias dna binding 0.02 Orthogroups_2024-Update
Seita.2G420800.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.07 Orthogroups_2024-Update
Sobic.005G034700.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.03 Orthogroups_2024-Update
Sobic.008G033900.2 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.04 Orthogroups_2024-Update
evm.model.contig_2108.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 530 572
IPR018501 DDT_dom 314 370
IPR028942 WHIM1_dom 429 460
No external refs found!