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  5. Glyma.08G223200

Glyma.08G223200


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0001823 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001823_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G223200
Cluster HCCA clusters: Cluster_484

Target Alias Description ECC score Gene Family Method Actions
A4A49_14074 No alias hypothetical protein 0.05 Orthogroups_2024-Update
Glyma.07G003500 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G100830.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Mpzg00560.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Sobic.007G091600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G040800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
evm.model.tig00020961.130 No alias (at3g13700 : 109.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 217 278
No external refs found!