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  5. Glyma.09G058602

Glyma.09G058602


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0009348 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009348_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G058602
Cluster HCCA clusters: Cluster_533

Target Alias Description ECC score Gene Family Method Actions
Potri.018G143800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 141 167
IPR002885 Pentatricopeptide_repeat 243 272
IPR002885 Pentatricopeptide_repeat 174 203
IPR002885 Pentatricopeptide_repeat 345 387
IPR002885 Pentatricopeptide_repeat 275 323
No external refs found!