Glyma.15G181000

Description : auxin response factor 19

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.15G181000
Cluster	HCCA clusters: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
A4A49_29171	No alias	auxin response factor 18	0.04	Orthogroups_2024-Update
A4A49_35810	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
At4g23980	No alias	Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]	0.03	Orthogroups_2024-Update
Bradi5g10950	No alias	auxin response factor 1	0.03	Orthogroups_2024-Update
Brara.A01401.1	No alias	ARF-type transcription factor	0.06	Orthogroups_2024-Update
Brara.I04264.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G023813	No alias	auxin response factor 17	0.03	Orthogroups_2024-Update
GRMZM2G338259	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Glyma.01G103500	No alias	auxin response factor 9	0.05	Orthogroups_2024-Update
Glyma.02G239600	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
Glyma.02G281700	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Glyma.03G070500	No alias	auxin response factor 9	0.03	Orthogroups_2024-Update
Glyma.04G200600	No alias	auxin response factor 2	0.05	Orthogroups_2024-Update
Glyma.05G143800	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
Glyma.06G164900	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.08G027800	No alias	Transcriptional factor B3 family protein /...	0.06	Orthogroups_2024-Update
Glyma.08G100100	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.12G164100	No alias	auxin response factor 1	0.04	Orthogroups_2024-Update
Glyma.13G112600	No alias	Transcriptional factor B3 family protein /...	0.06	Orthogroups_2024-Update
Glyma.13G174000	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.13G221400	No alias	auxin response factor 8	0.06	Orthogroups_2024-Update
Glyma.14G032700	No alias	auxin response factor 6	0.06	Orthogroups_2024-Update
Glyma.14G208500	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.19G181900	No alias	auxin response factor 16	0.05	Orthogroups_2024-Update
LOC_Os02g41800	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os12g29520	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
Mp4g11820.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
PSME_00020341-RA	No alias	(at1g19220 : 630.0) Encodes an auxin response factor...	0.02	Orthogroups_2024-Update
PSME_00023067-RA	No alias	(at5g62000 : 335.0) Encodes an auxin response factor....	0.03	Orthogroups_2024-Update
Potri.003G001000	No alias	auxin response factor 1	0.03	Orthogroups_2024-Update
Potri.005G207700	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Potri.008G039000	No alias	auxin response factor 16	0.06	Orthogroups_2024-Update
Potri.009G014800	No alias	auxin response factor 10	0.03	Orthogroups_2024-Update
Pp1s339_47V6	No alias	auxin response factor 10	0.03	Orthogroups_2024-Update
Pp1s64_138V6	No alias	arf1-binding protein	0.02	Orthogroups_2024-Update
Pp1s86_1V6	No alias	auxin response	0.03	Orthogroups_2024-Update
Seita.1G090900.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Seita.4G257800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.010G073600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Sobic.010G253300.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.04	Orthogroups_2024-Update
Sopen01g045470	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
evm.model.tig00020904.93	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
CC	GO:0005669	transcription factor TFIID complex	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	992	1081
IPR010525	Auxin_resp	252	334
IPR003340	B3_DNA-bd	126	227

External Links

No external refs found!

Glyma.15G181000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation