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  5. Glyma.17G256200

Glyma.17G256200


Description : ATP-dependent RNA helicase, putative


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.17G256200
Cluster HCCA clusters: Cluster_490

Target Alias Description ECC score Gene Family Method Actions
82212 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
A4A49_00699 No alias pre-mrna-splicing factor atp-dependent rna helicase deah7 0.03 Orthogroups_2024-Update
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.05 Orthogroups_2024-Update
At3g26560 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Bradi1g61220 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Bradi1g64190 No alias RNA helicase family protein 0.05 Orthogroups_2024-Update
Bradi3g03570 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Bradi3g13460 No alias ATP-dependent RNA helicase, putative 0.04 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G052730.3 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
LOC_Os02g50370 No alias helicase domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g32430 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 Orthogroups_2024-Update
LOC_Os08g24760 No alias ATP-dependent RNA helicase, putative, expressed 0.05 Orthogroups_2024-Update
MA_629782g0010 No alias (at5g13010 : 617.0) embryo defective 3011 (EMB3011);... 0.03 Orthogroups_2024-Update
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Orthogroups_2024-Update
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Potri.010G057200 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.012G034200 No alias ATP-dependent RNA helicase, putative 0.04 Orthogroups_2024-Update
Pp1s43_55V6 No alias deah (asp-glu-ala-his) box polypeptide 16 0.02 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.05 Orthogroups_2024-Update
Seita.3G152600.1 No alias RNA helicase *(Prp2) 0.04 Orthogroups_2024-Update
Sobic.001G473000.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.04 Orthogroups_2024-Update
Sobic.004G174200.1 No alias RNA helicase *(Prp2) 0.06 Orthogroups_2024-Update
Solyc01g095710 No alias RNA helicase DEAH-box3 0.03 Orthogroups_2024-Update
Solyc10g076910 No alias ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SMB4_RICCO) 0.02 Orthogroups_2024-Update
evm.model.tig00000842.2 No alias (at3g26560 : 568.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 936 1024
IPR011545 DEAD/DEAH_box_helicase_dom 550 700
IPR001650 Helicase_C 742 874
IPR011709 DUF1605 1082 1158
IPR003029 S1_domain 246 312
No external refs found!