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  5. Solyc02g089560

Solyc02g089560


Description : Pentatricopeptide repeat (PPR) superfamily protein, putative (AHRD V3.3 *** A0A061DIE6_THECC)


Gene families : OG_42_0004307 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004307_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc02g089560
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At3g02490 No alias Pentatricopeptide repeat-containing protein At3g02490,... 0.05 Orthogroups_2024-Update
At3g48250 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.03 Orthogroups_2024-Update
At5g15980 No alias Pentatricopeptide repeat-containing protein At5g15980,... 0.09 Orthogroups_2024-Update
Bradi3g07350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Brara.C02989.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Brara.F02162.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.11 Orthogroups_2024-Update
Brara.J01919.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Glyma.18G278400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G032550.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.06 Orthogroups_2024-Update
LOC_Os01g73950 No alias PPR repeat containing protein, expressed 0.03 Orthogroups_2024-Update
Potri.015G084800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Seita.1G046200.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Seita.5G467400.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sobic.003G442800.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Sobic.004G082700.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Sopen02g034290 No alias PPR repeat 0.15 Orthogroups_2024-Update
Sopen03g031280 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006449 regulation of translational termination IEP Predicted GO
BP GO:0006452 translational frameshifting IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0043243 positive regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0045727 positive regulation of translation IEP Predicted GO
BP GO:0045901 positive regulation of translational elongation IEP Predicted GO
BP GO:0045905 positive regulation of translational termination IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051247 positive regulation of protein metabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 145 173
IPR002885 Pentatricopeptide_repeat 282 310
IPR002885 Pentatricopeptide_repeat 460 484
No external refs found!