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  5. Solyc03g005590

Solyc03g005590


Description : Regulator of chromosome condensation (RCC1) family protein (AHRD V3.3 *** AT4G14368.3)


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g005590
Cluster HCCA clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Glyma.10G006300 No alias Regulator of chromosome condensation (RCC1) family protein 0.03 Orthogroups_2024-Update
Glyma.11G168801 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
HORVU2Hr1G124270.6 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.001G026900 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Seita.3G069300.1 No alias regulatory protein *(RLD) of gravity sensing 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
BP GO:0044030 regulation of DNA methylation IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 985 1039
IPR027988 BRX_N 857 890
IPR000306 Znf_FYVE 600 666
IPR000408 Reg_chr_condens 495 544
IPR000408 Reg_chr_condens 327 377
IPR000408 Reg_chr_condens 549 595
IPR000408 Reg_chr_condens 275 323
IPR000408 Reg_chr_condens 446 490
IPR000408 Reg_chr_condens 381 430
No external refs found!