- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Transcription initiation factor IIF, beta subunit
Gene families : OG_42_0003115 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003115_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G049091 | |
| Cluster | HCCA clusters: Cluster_200 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi2g20310 | No alias | Transcription initiation factor IIF, beta subunit | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G077900.1 | No alias | subunit beta of TFIIf basal transcription factor complex | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
| CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Predicted GO |
| BP | GO:0006996 | organelle organization | IEP | Predicted GO |
| BP | GO:0007029 | endoplasmic reticulum organization | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Predicted GO |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Predicted GO |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Predicted GO |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Predicted GO |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
| MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |