GRMZM2G100403

Description : Ribosomal protein L4/L1 family

Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G100403
Cluster	HCCA clusters: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
166994	No alias	Ribosomal protein L4/L1 family	0.11	Orthogroups_2024-Update
At3g09630	No alias	60S ribosomal protein L4-1...	0.06	Orthogroups_2024-Update
Bradi1g05510	No alias	Ribosomal protein L4/L1 family	0.17	Orthogroups_2024-Update
Bradi1g55510	No alias	Ribosomal protein L4/L1 family	0.18	Orthogroups_2024-Update
Brara.A03522.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.C00088.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Brara.E03076.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Brara.J02849.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Cre09.g397697	No alias	Ribosomal protein L4/L1 family	0.07	Orthogroups_2024-Update
Glyma.03G177400	No alias	Ribosomal protein L4/L1 family	0.04	Orthogroups_2024-Update
Glyma.10G048600	No alias	Ribosomal protein L4/L1 family	0.11	Orthogroups_2024-Update
Glyma.13G136400	No alias	Ribosomal protein L4/L1 family	0.1	Orthogroups_2024-Update
HORVU4Hr1G075710.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
HORVU5Hr1G105870.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00456_0100	kfl00456_0100_v1.1	(at3g09630 : 489.0) Ribosomal protein L4/L1 family;...	0.05	Orthogroups_2024-Update
LOC_Os07g08330	No alias	ribosomal protein L4, putative, expressed	0.03	Orthogroups_2024-Update
MA_10434860g0020	No alias	(at3g09630 : 190.0) Ribosomal protein L4/L1 family;...	0.02	Orthogroups_2024-Update
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.05	Orthogroups_2024-Update
Potri.016G084400	No alias	Ribosomal protein L4/L1 family	0.06	Orthogroups_2024-Update
Potri.T159800	No alias	Ribosomal protein L4/L1 family	0.08	Orthogroups_2024-Update
Pp1s10_102V6	No alias	60s ribosomal protein l4	0.08	Orthogroups_2024-Update
Pp1s10_369V6	No alias	60s ribosomal protein l4	0.02	Orthogroups_2024-Update
Pp1s18_113V6	No alias	60s ribosomal protein l4	0.06	Orthogroups_2024-Update
Pp1s40_305V6	No alias	60s ribosomal protein l4	0.1	Orthogroups_2024-Update
Seita.2G055300.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Seita.9G056000.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Sobic.001G057300.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Sobic.002G054000.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Solyc09g007250	No alias	60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR)	0.14	Orthogroups_2024-Update
Solyc10g084350	No alias	60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR)	0.09	Orthogroups_2024-Update
Solyc10g086010	No alias	60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR)	0.16	Orthogroups_2024-Update
Sopen09g002120	No alias	Ribosomal protein L4/L1 family	0.1	Orthogroups_2024-Update
Sopen10g033800	No alias	Ribosomal protein L4/L1 family	0.14	Orthogroups_2024-Update
Sopen10g035380	No alias	Ribosomal protein L4/L1 family	0.15	Orthogroups_2024-Update
evm.model.contig_2049.5	No alias	(at3g09630 : 394.0) Ribosomal protein L4/L1 family;...	0.11	Orthogroups_2024-Update
evm.model.tig00022075.53	No alias	(at3g09630 : 404.0) Ribosomal protein L4/L1 family;...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
CC	GO:0000178	exosome (RNase complex)	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004424	imidazoleglycerol-phosphate dehydratase activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	IEP	Predicted GO
MF	GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predicted GO
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Predicted GO
CC	GO:1905354	exoribonuclease complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025755	Ribos_L4_C_dom	279	352
IPR002136	Ribosomal_L4/L1e	26	266

External Links

No external refs found!

GRMZM2G100403

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation