1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A01816.1

Brara.A01816.1


Description : component *(MPE1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG_42_0001891 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001891_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01816.1
Cluster HCAA Clusters: Cluster_304

Target Alias Description ECC score Gene Family Method Actions
93893 No alias DWNN domain, a CCHC-type zinc finger 0.02 Orthogroups_2024-Update
Kfl00059_0250 kfl00059_0250_v1.1 (at5g47430 : 281.0) DWNN domain, a CCHC-type zinc... 0.02 Orthogroups_2024-Update
PSME_00016342-RA No alias (at5g47430 : 553.0) DWNN domain, a CCHC-type zinc... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR014891 DWNN_domain 3 76
IPR025829 Zn_knuckle_CX2CX3GHX4C 203 223
No external refs found!