1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.C01887.1

Brara.C01887.1


Description : Unknown function


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C01887.1
Cluster HCAA Clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
A4A49_11165 No alias ring-h2 finger protein atl8 0.04 Orthogroups_2024-Update
A4A49_29196 No alias ring-h2 finger protein atl72 0.04 Orthogroups_2024-Update
A4A49_31261 No alias ring-h2 finger protein atl70 0.04 Orthogroups_2024-Update
A4A49_36505 No alias e3 ubiquitin-protein ligase atl6 0.03 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.03 Orthogroups_2024-Update
At4g40070 No alias RING-H2 finger protein ATL32... 0.04 Orthogroups_2024-Update
At5g05280 No alias RING-H2 finger protein ATL73... 0.04 Orthogroups_2024-Update
At5g47610 No alias At5g47610 [Source:UniProtKB/TrEMBL;Acc:Q1H5E6] 0.03 Orthogroups_2024-Update
Bradi1g60390 No alias hypoxia-responsive family protein / zinc finger... 0.05 Orthogroups_2024-Update
Bradi2g22650 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Brara.A00708.1 No alias regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1) 0.03 Orthogroups_2024-Update
Brara.A02911.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B00007.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02009.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02021.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.B02994.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.B03540.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C03353.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02303.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E02957.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F00385.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G01336.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H02311.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.J02480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G171277 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G078800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G156500 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G157400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G194600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G014500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G069980.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Kfl00212_0070 kfl00212_0070_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os02g33720 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g11450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10431388g0020 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_10436208g0010 No alias (at1g72200 : 100.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_308999g0010 No alias (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_569551g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_634100g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_904294g0010 No alias (at1g72310 : 107.0) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
PSME_00003016-RA No alias (at1g72200 : 114.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
PSME_00003023-RA No alias (at1g72200 : 141.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00054098-RA No alias (at3g16720 : 124.0) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G036800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G206300 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Potri.019G091400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Pp1s185_21V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Pp1s41_270V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.03 Orthogroups_2024-Update
Seita.1G017900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.1G197600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.3G272800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.5G309700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.002G232800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.002G233000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G181300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G187800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.005G012100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G071000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc03g112340 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G05200.1) 0.03 Orthogroups_2024-Update
Solyc08g076830 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc11g006450 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) 0.03 Orthogroups_2024-Update
Sopen02g017550 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen02g031720 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen04g029750 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g001320 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.tig00000367.17 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00020684.6 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
  • ECC
  • Annotation
  • Links
    1. Home
    2. Species
    3. Brassica rapa
    4. Sequence
    5. Brara.I03307.1

    Brara.I03307.1


    Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


    Type GO Term Name Evidence Source

    No GO annotation available for this sequence
    Toggle parental
    Type GO Term Name Evidence Source
    CC GO:0000145 exocyst IEP Predicted GO
    CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
    MF GO:0003993 acid phosphatase activity IEP Predicted GO
    MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
    MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
    BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
    BP GO:0006473 protein acetylation IEP Predicted GO
    BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
    BP GO:0006508 proteolysis IEP Predicted GO
    BP GO:0006887 exocytosis IEP Predicted GO
    MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
    BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
    BP GO:0010468 regulation of gene expression IEP Predicted GO
    BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
    MF GO:0016407 acetyltransferase activity IEP Predicted GO
    MF GO:0016410 N-acyltransferase activity IEP Predicted GO
    BP GO:0016485 protein processing IEP Predicted GO
    BP GO:0016569 covalent chromatin modification IEP Predicted GO
    BP GO:0016570 histone modification IEP Predicted GO
    BP GO:0016573 histone acetylation IEP Predicted GO
    MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
    BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
    BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
    BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
    BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
    MF GO:0031267 small GTPase binding IEP Predicted GO
    BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
    BP GO:0032940 secretion by cell IEP Predicted GO
    MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
    MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predicted GO
    BP GO:0043543 protein acylation IEP Predicted GO
    CC GO:0044448 cell cortex part IEP Predicted GO
    BP GO:0046903 secretion IEP Predicted GO
    MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
    BP GO:0050789 regulation of biological process IEP Predicted GO
    BP GO:0050794 regulation of cellular process IEP Predicted GO
    BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
    BP GO:0051604 protein maturation IEP Predicted GO
    MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
    MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
    MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
    BP GO:0071586 CAAX-box protein processing IEP Predicted GO
    MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
    MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
    BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
    BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
    BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
    InterPro domains Description Start Stop
    IPR001841 Znf_RING 144 188
    No external refs found!