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  5. Brara.C04578.1

Brara.C04578.1


Description : tobamovirus multiplication replication host factor *(TOM1)


Gene families : OG_42_0000984 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000984_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C04578.1
Cluster HCAA Clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
At2g02180 No alias Tobamovirus multiplication protein 3... 0.06 Orthogroups_2024-Update
Bradi1g59650 No alias tobamovirus multiplication 1 0.02 Orthogroups_2024-Update
Cre12.g487250 No alias tobamovirus multiplication 1 0.03 Orthogroups_2024-Update
HORVU6Hr1G066210.12 No alias tobamovirus multiplication replication host factor *(TOM1) 0.03 Orthogroups_2024-Update
LOC_Os03g36790 No alias tobamovirus multiplication protein, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s295_30V6 No alias virion binding 0.03 Orthogroups_2024-Update
Seita.9G563000.1 No alias tobamovirus multiplication replication host factor *(TOM1) 0.02 Orthogroups_2024-Update
Sopen01g003440 No alias Protein of unknown function (DUF1084) 0.04 Orthogroups_2024-Update
Sopen04g003700 No alias Protein of unknown function (DUF1084) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009457 DUF1084 16 287
No external refs found!