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Description : plastidial transcript stability factor *(HCF107)
Gene families : OG_42_0005803 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005803_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.E02474.1 | |
| Cluster | HCAA Clusters: Cluster_230 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_20351 | No alias | protein high chlorophyll fluorescent 107 | 0.04 | Orthogroups_2024-Update | |
| At3g17040 | No alias | Protein high chlorophyll fluorescent 107... | 0.1 | Orthogroups_2024-Update | |
| Cre09.g416200 | No alias | high chlorophyll fluorescent 107 | 0.02 | Orthogroups_2024-Update | |
| Glyma.07G240000 | No alias | high chlorophyll fluorescent 107 | 0.05 | Orthogroups_2024-Update | |
| Glyma.17G033400 | No alias | high chlorophyll fluorescent 107 | 0.05 | Orthogroups_2024-Update | |
| Kfl00145_0180 | kfl00145_0180_v1.1 | (at3g17040 : 324.0) It is a RNA tetratricopeptide... | 0.02 | Orthogroups_2024-Update | |
| Potri.010G145000 | No alias | high chlorophyll fluorescent 107 | 0.03 | Orthogroups_2024-Update | |
| Seita.9G428300.1 | No alias | plastidial transcript stability factor *(HCF107) | 0.04 | Orthogroups_2024-Update | |
| Sopen04g004200 | No alias | Tetratricopeptide repeat | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_587.2 | No alias | (at3g17040 : 102.0) It is a RNA tetratricopeptide... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Predicted GO |
| MF | GO:0005216 | ion channel activity | IEP | Predicted GO |
| MF | GO:0005244 | voltage-gated ion channel activity | IEP | Predicted GO |
| MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Predicted GO |
| MF | GO:0005253 | anion channel activity | IEP | Predicted GO |
| MF | GO:0005254 | chloride channel activity | IEP | Predicted GO |
| MF | GO:0005315 | inorganic phosphate transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | Predicted GO |
| BP | GO:0006721 | terpenoid metabolic process | IEP | Predicted GO |
| BP | GO:0006817 | phosphate ion transport | IEP | Predicted GO |
| BP | GO:0006820 | anion transport | IEP | Predicted GO |
| BP | GO:0006821 | chloride transport | IEP | Predicted GO |
| MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Predicted GO |
| MF | GO:0008308 | voltage-gated anion channel activity | IEP | Predicted GO |
| MF | GO:0008509 | anion transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Predicted GO |
| MF | GO:0008883 | glutamyl-tRNA reductase activity | IEP | Predicted GO |
| CC | GO:0009521 | photosystem | IEP | Predicted GO |
| CC | GO:0009522 | photosystem I | IEP | Predicted GO |
| MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015108 | chloride transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015267 | channel activity | IEP | Predicted GO |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0015698 | inorganic anion transport | IEP | Predicted GO |
| BP | GO:0015979 | photosynthesis | IEP | Predicted GO |
| CC | GO:0016020 | membrane | IEP | Predicted GO |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | Predicted GO |
| BP | GO:0016485 | protein processing | IEP | Predicted GO |
| MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups | IEP | Predicted GO |
| MF | GO:0016851 | magnesium chelatase activity | IEP | Predicted GO |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | Predicted GO |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0022832 | voltage-gated channel activity | IEP | Predicted GO |
| MF | GO:0022836 | gated channel activity | IEP | Predicted GO |
| MF | GO:0022838 | substrate-specific channel activity | IEP | Predicted GO |
| MF | GO:0022839 | ion gated channel activity | IEP | Predicted GO |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
| CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
| MF | GO:0050661 | NADP binding | IEP | Predicted GO |
| MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
| MF | GO:0051002 | ligase activity, forming nitrogen-metal bonds | IEP | Predicted GO |
| MF | GO:0051003 | ligase activity, forming nitrogen-metal bonds, forming coordination complexes | IEP | Predicted GO |
| BP | GO:0051604 | protein maturation | IEP | Predicted GO |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |