- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : endoribonuclease *(CSP41)
Gene families : OG_42_0003865 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003865_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.F00592.1 | |
| Cluster | HCAA Clusters: Cluster_155 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi4g08030 | No alias | chloroplast RNA binding | 0.02 | Orthogroups_2024-Update | |
| Glyma.19G227700 | No alias | chloroplast RNA binding | 0.03 | Orthogroups_2024-Update | |
| Pp1s71_283V6 | No alias | nad-dependent epimerase dehydratase | 0.03 | Orthogroups_2024-Update | |
| Sopen06g029620 | No alias | NAD dependent epimerase/dehydratase family | 0.04 | Orthogroups_2024-Update | |
| evm.model.contig_3495.2 | No alias | (at1g09340 : 335.0) Encodes CHLOROPLAST RNA BINDING... | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00021181.14 | No alias | (at1g09340 : 348.0) Encodes CHLOROPLAST RNA BINDING... | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00021720.14 | No alias | (at1g09340 : 242.0) Encodes CHLOROPLAST RNA BINDING... | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003712 | transcription coregulator activity | IEP | Predicted GO |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Predicted GO |
| MF | GO:0004329 | formate-tetrahydrofolate ligase activity | IEP | Predicted GO |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | Predicted GO |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
| BP | GO:0006558 | L-phenylalanine metabolic process | IEP | Predicted GO |
| BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Predicted GO |
| BP | GO:0009094 | L-phenylalanine biosynthetic process | IEP | Predicted GO |
| BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Predicted GO |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Predicted GO |
| BP | GO:0016458 | gene silencing | IEP | Predicted GO |
| CC | GO:0016592 | mediator complex | IEP | Predicted GO |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Predicted GO |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Predicted GO |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
| MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
| BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
| BP | GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:1902223 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001509 | Epimerase_deHydtase | 56 | 273 |
| No external refs found! |