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  5. Brara.G00036.1

Brara.G00036.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00036.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
A4A49_16908 No alias putative transcription factor kan2 0.03 Orthogroups_2024-Update
Glyma.10G196600 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G079000 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G247600 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G109040.4 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G000410.1 No alias KANADI-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os06g45890 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
Potri.015G031600 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G185800.1 No alias GARP subgroup PHL transcription factor & regulatory... 0.03 Orthogroups_2024-Update
Sobic.002G194400.1 No alias KANADI-type transcription factor 0.04 Orthogroups_2024-Update
Solyc04g079600 No alias Homeodomain-like superfamily protein (AHRD V3.3 *** AT5G42630.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004363 glutathione synthase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 186 237
IPR025756 Myb_CC_LHEQLE 270 315
No external refs found!