Brara.G00231.1

Description : cold-responsive mRNA chaperone *(CSD) & RNA chaperone (CSP) of mRNA quality control

Gene families : OG_42_0001475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001475_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.G00231.1
Cluster	HCAA Clusters: Cluster_349

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi3g01960	No alias	cold shock domain protein 1	0.02	Orthogroups_2024-Update
Glyma.06G110400	No alias	cold shock domain protein 1	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	16Dec
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	127	142
IPR001878	Znf_CCHC	95	109
IPR002059	CSP_DNA-bd	12	76

External Links

No external refs found!