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  5. Brara.I03016.1

Brara.I03016.1


Description : component *(uL22) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001801 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001801_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I03016.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
96251 No alias Ribosomal protein L22p/L17e family protein 0.04 Orthogroups_2024-Update
Bradi3g41150 No alias Ribosomal protein L22p/L17e family protein 0.06 Orthogroups_2024-Update
Bradi4g08667 No alias Ribosomal protein L22p/L17e family protein 0.06 Orthogroups_2024-Update
Cre13.g568900 No alias Ribosomal protein L22p/L17e family protein 0.07 Orthogroups_2024-Update
GRMZM2G126594 No alias Ribosomal protein L22p/L17e family protein 0.03 Orthogroups_2024-Update
GRMZM2G148744 No alias Ribosomal protein L22p/L17e family protein 0.04 Orthogroups_2024-Update
Glyma.05G146800 No alias Ribosomal protein L22p/L17e family protein 0.04 Orthogroups_2024-Update
Glyma.08G103700 No alias Ribosomal protein L22p/L17e family protein 0.07 Orthogroups_2024-Update
Glyma.11G249700 No alias Ribosomal protein L22p/L17e family protein 0.05 Orthogroups_2024-Update
Glyma.18G007500 No alias Ribosomal protein L22p/L17e family protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G052280.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU7Hr1G054010.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Kfl00006_0040 kfl00006_0040_v1.1 (at1g67430 : 219.0) Ribosomal protein L22p/L17e family... 0.02 Orthogroups_2024-Update
MA_10430182g0010 No alias (at1g27400 : 272.0) Ribosomal protein L22p/L17e family... 0.05 Orthogroups_2024-Update
PSME_00016621-RA No alias (o48557|rl17_maize : 300.0) 60S ribosomal protein L17 -... 0.03 Orthogroups_2024-Update
Potri.012G096600 No alias Ribosomal protein L22p/L17e family protein 0.08 Orthogroups_2024-Update
Pp1s22_76V6 No alias 60s ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s364_56V6 No alias 60s ribosomal protein 0.08 Orthogroups_2024-Update
Pp1s38_376V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s97_74V6 No alias 60s ribosomal protein 0.07 Orthogroups_2024-Update
Pp1s97_78V6 No alias 60s ribosomal protein 0.07 Orthogroups_2024-Update
Seita.5G119300.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.6G112100.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.7G314300.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.8G022000.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.001G016400.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Sobic.001G016500.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G076400.1 No alias component *(uL22) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Solyc03g111230 No alias Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY) 0.08 Orthogroups_2024-Update
Solyc06g071870 No alias Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY) 0.07 Orthogroups_2024-Update
Solyc06g071880 No alias 60S ribosomal protein L17 (AHRD V3.3 *** A0A0D3QSL6_TOBAC) 0.09 Orthogroups_2024-Update
Sopen03g030370 No alias Ribosomal protein L22p/L17e 0.06 Orthogroups_2024-Update
Sopen06g028150 No alias Ribosomal protein L22p/L17e 0.08 Orthogroups_2024-Update
Sopen06g028160 No alias Ribosomal protein L22p/L17e 0.08 Orthogroups_2024-Update
evm.model.contig_2031.15 No alias (p35267|rl172_horvu : 178.0) 60S ribosomal protein L17-2... 0.1 Orthogroups_2024-Update
evm.model.tig00001215.8 No alias (o48557|rl17_maize : 230.0) 60S ribosomal protein L17 -... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
MF GO:0042586 peptide deformylase activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 17 152
No external refs found!