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  5. Brara.I05467.1

Brara.I05467.1


Description : component *(uL6c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0002024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I05467.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
A4A49_09051 No alias 50s ribosomal protein l6, chloroplastic 0.03 Orthogroups_2024-Update
Bradi1g62170 No alias Ribosomal protein L6 family 0.05 Orthogroups_2024-Update
Cre09.g415950 No alias Ribosomal protein L6 family 0.04 Orthogroups_2024-Update
HORVU4Hr1G040950.3 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Kfl00137_0220 kfl00137_0220_v1.1 (at1g05190 : 221.0) embryo defective 2394 (emb2394);... 0.03 Orthogroups_2024-Update
Potri.014G153000 No alias Ribosomal protein L6 family 0.04 Orthogroups_2024-Update
Seita.9G400600.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sobic.001G368500.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Solyc12g100160 No alias Ribosomal protein L6 family (AHRD V3.3 *** AT1G05190.1) 0.04 Orthogroups_2024-Update
Sopen12g034790 No alias Ribosomal protein L6 0.05 Orthogroups_2024-Update
evm.model.contig_2346.8 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
MF GO:0019843 rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 134 208
IPR020040 Ribosomal_L6_a/b-dom 54 126
No external refs found!