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  5. Brara.J00407.1

Brara.J00407.1


Description : RBR-Ariadne-class E3 ubiquitin ligase


Gene families : OG_42_0000347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00407.1
Cluster HCAA Clusters: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
Bradi3g48130 No alias IBR domain-containing protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G055260.4 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os03g13100 No alias ariadne-1, putative, expressed 0.03 Orthogroups_2024-Update
MA_88915g0010 No alias (at1g65430 : 735.0) ARIADNE 8 (ARI8); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Solyc11g008580 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G05890.1) 0.03 Orthogroups_2024-Update
evm.model.tig00020556.44 No alias (at3g27710 : 223.0) ARIADNE 3 (ARI3); FUNCTIONS IN: zinc... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 208 270
IPR002867 IBR_dom 288 335
No external refs found!