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  5. HORVU4Hr1G011510.3

HORVU4Hr1G011510.3


Description : Nonsense-Mediated mRNA Decay kinase *(SMG1)


Gene families : OG_42_0007310 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G011510.3
Cluster HCAA Clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
88215 No alias target of rapamycin 0.03 Orthogroups_2024-Update
Bradi1g09310 No alias target of rapamycin 0.06 Orthogroups_2024-Update
Cre13.g572050 No alias target of rapamycin 0.06 Orthogroups_2024-Update
Kfl00790_0020 kfl00790_0020_v1.... (at5g40820 : 171.0) Encodes a Arabidopsis ortholog of... 0.03 Orthogroups_2024-Update
Pp1s51_180V6 No alias pi-3-kinase-related kinase smg-1 0.04 Orthogroups_2024-Update
Sobic.001G097200.1 No alias Nonsense-Mediated mRNA Decay kinase *(SMG1) 0.04 Orthogroups_2024-Update
Sopen01g051280 No alias Phosphatidylinositol 3- and 4-kinase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA 16Dec
MF GO:0004674 protein serine/threonine kinase activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
BP GO:0016310 phosphorylation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000403 PI3/4_kinase_cat_dom 2003 2278
IPR003152 FATC_dom 3694 3723
IPR031559 SMG1 655 1174
No external refs found!