Solyc03g082570

Description : ubiquitin-ribosomal fusion protein

Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc03g082570
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
101548	No alias	ubiquitin 5	0.02	Orthogroups_2024-Update
19615	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
228943	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
At2g36170	No alias	Ubiquitin-60S ribosomal protein L40-1...	0.03	Orthogroups_2024-Update
At4g02890	No alias	Polyubiquitin 14 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7T8]	0.02	Orthogroups_2024-Update
Bradi1g30940	No alias	related to ubiquitin 1	0.05	Orthogroups_2024-Update
Bradi1g32460	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Bradi1g68940	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Orthogroups_2024-Update
Bradi2g12280	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.02	Orthogroups_2024-Update
Bradi2g34750	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Bradi3g04730	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Bradi4g38540	No alias	ubiquitin extension protein 1	0.03	Orthogroups_2024-Update
Brara.C01815.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.C02349.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.G00981.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.G01965.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.I03230.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.I03566.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre06.g273600	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.02	Orthogroups_2024-Update
Cre09.g396400	No alias	related to ubiquitin 1	0.01	Orthogroups_2024-Update
GRMZM2G006293	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
GRMZM2G047732	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
GRMZM2G168829	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
Glyma.04G231500	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Orthogroups_2024-Update
Glyma.09G023700	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Glyma.19G195500	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.07	Orthogroups_2024-Update
HORVU1Hr1G023660.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU4Hr1G001170.5	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
MA_529552g0010	No alias	(at3g62250 : 229.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:...	0.02	Orthogroups_2024-Update
MA_53043g0010	No alias	(at1g31340 : 234.0) Encodes a ubiquitin-related protein...	0.02	Orthogroups_2024-Update
Mp7g12760.1	No alias	component RPS27a of SSU proteome	0.05	Orthogroups_2024-Update
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.02	Orthogroups_2024-Update
Potri.012G024300	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.03	Orthogroups_2024-Update
Pp1s184_64V6	No alias	ubiquitin extension protein	0.02	Orthogroups_2024-Update
Pp1s268_35V6	No alias	ubiquitin fusion protein	0.02	Orthogroups_2024-Update
Pp1s351_6V6	No alias	polyubiquitin containing 7 ubiquitin monomers	0.02	Orthogroups_2024-Update
Seita.2G133700.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.7G270700.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Seita.9G478400.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.003G152600.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Sobic.009G054800.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sopen03g022330	No alias	Ubiquitin family	0.06	Orthogroups_2024-Update
Sopen08g004410	No alias	Ubiquitin family	0.06	Orthogroups_2024-Update
Sopen08g031340	No alias	Ubiquitin family	0.03	Orthogroups_2024-Update
evm.model.contig_2055.11	No alias	(at3g52590 : 241.0) Ubiquitin extension protein;...	0.03	Orthogroups_2024-Update
evm.model.contig_2285.8	No alias	(p00074\|cyc_ginbi : 153.0) Cytochrome c - Ginkgo biloba...	0.03	Orthogroups_2024-Update
evm.model.contig_3445.1	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	Predicted GO
MF	GO:0004797	thymidine kinase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006183	GTP biosynthetic process	IEP	Predicted GO
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006228	UTP biosynthetic process	IEP	Predicted GO
BP	GO:0006241	CTP biosynthetic process	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009148	pyrimidine nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0009208	pyrimidine ribonucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009209	pyrimidine ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019206	nucleoside kinase activity	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
BP	GO:0043085	positive regulation of catalytic activity	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
BP	GO:0044093	positive regulation of molecular function	IEP	Predicted GO
BP	GO:0046036	CTP metabolic process	IEP	Predicted GO
BP	GO:0046039	GTP metabolic process	IEP	Predicted GO
BP	GO:0046051	UTP metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046132	pyrimidine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046134	pyrimidine nucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001975	Ribosomal_L40e	78	127
IPR000626	Ubiquitin_dom	3	74

External Links

No external refs found!

Solyc03g082570

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation