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  5. HORVU5Hr1G002030.2

HORVU5Hr1G002030.2


Description : substrate adaptor of CUL4-based E3 ubiquitin ligase complex


Gene families : OG_42_0003953 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003953_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G002030.2
Cluster HCAA Clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Bradi5g22017 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.04 Orthogroups_2024-Update
Glyma.09G037300 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.03 Orthogroups_2024-Update
Glyma.10G013500 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.03 Orthogroups_2024-Update
Kfl00516_0080 kfl00516_0080_v1.1 (at5g49430 : 657.0) WD40/YVTN repeat-like-containing... 0.02 Orthogroups_2024-Update
PSME_00015837-RA No alias (at2g47410 : 971.0) WD40/YVTN repeat-like-containing... 0.03 Orthogroups_2024-Update
Seita.9G430500.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Sobic.003G059750.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 500 527
IPR001680 WD40_repeat 338 374
IPR001680 WD40_repeat 381 416
IPR001680 WD40_repeat 679 718
IPR001680 WD40_repeat 423 462
No external refs found!