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  5. HORVU5Hr1G024180.8

HORVU5Hr1G024180.8


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G024180.8
Cluster HCAA Clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AC196637.2_FG002 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
At3g47530 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.03 Orthogroups_2024-Update
At4g38010 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.03 Orthogroups_2024-Update
Brara.A02032.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A03053.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.09G236700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G016720.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G008310.1 No alias Unknown function 0.04 Orthogroups_2024-Update
MA_767209g0010 No alias (at3g49170 : 650.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
PSME_00013943-RA No alias (at3g23330 : 569.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00026227-RA No alias (at1g11290 : 692.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00033354-RA No alias (at3g53360 : 430.0) Tetratricopeptide repeat (TPR)-like... 0.08 Orthogroups_2024-Update
PSME_00039409-RA No alias (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00042206-RA No alias (at1g11290 : 595.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00056965-RA No alias (at4g39530 : 592.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Pp1s276_42V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Seita.7G324400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g119120 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032392 DNA geometric change IEP Predicted GO
BP GO:0032508 DNA duplex unwinding IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 107 154
IPR002885 Pentatricopeptide_repeat 612 658
IPR002885 Pentatricopeptide_repeat 209 255
IPR002885 Pentatricopeptide_repeat 309 355
IPR002885 Pentatricopeptide_repeat 511 556
IPR002885 Pentatricopeptide_repeat 412 442
IPR002885 Pentatricopeptide_repeat 81 103
IPR002885 Pentatricopeptide_repeat 182 205
IPR002885 Pentatricopeptide_repeat 385 408
IPR002885 Pentatricopeptide_repeat 483 508
IPR002885 Pentatricopeptide_repeat 687 711
IPR032867 DYW_dom 827 919
No external refs found!