1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU6Hr1G025670.1

HORVU6Hr1G025670.1


Description : RNA helicase component *(SKI2) of SUPERKILLER regulation complex


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G025670.1
Cluster HCAA Clusters: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
At3g46960 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.04 Orthogroups_2024-Update
Bradi3g04550 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
GRMZM2G040995 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
PSME_00020414-RA No alias (at3g46960 : 409.0) RNA helicase, ATP-dependent,... 0.03 Orthogroups_2024-Update
PSME_00022970-RA No alias (at2g06990 : 1419.0) encodes a putative DExH-box RNA... 0.03 Orthogroups_2024-Update
Seita.1G080100.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.02 Orthogroups_2024-Update
Sobic.004G048800.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.03 Orthogroups_2024-Update
Sopen01g045490 No alias rRNA-processing arch domain 0.02 Orthogroups_2024-Update
Sopen06g001970 No alias DSHCT (NUC185) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 864 1163
IPR012961 Ski2_C 1190 1359
IPR011545 DEAD/DEAH_box_helicase_dom 383 530
No external refs found!