1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G001900.1

Sobic.001G001900.1


Description : component *(LUG/LUH) of transcriptional co-repressor complex


Gene families : OG_42_0000674 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000674_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G001900.1
Cluster HCAA Clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Bradi1g00567 No alias LEUNIG_homolog 0.06 Orthogroups_2024-Update
Bradi2g43077 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.03 Orthogroups_2024-Update
GRMZM2G022383 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 Orthogroups_2024-Update
LOC_Os02g56880 No alias transcriptional corepressor LEUNIG, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g64300 No alias THION30 - Plant thionin family protein precursor, expressed 0.04 Orthogroups_2024-Update
MA_34795g0010 No alias (at4g32551 : 597.0) LEUNIG regulates floral organ... 0.03 Orthogroups_2024-Update
MA_65863g0010 No alias (at2g32700 : 119.0) Encodes a WD40 repeat and LUFS... 0.04 Orthogroups_2024-Update
Seita.5G220300.1 No alias component *(LUG/LUH) of transcriptional co-repressor complex 0.08 Orthogroups_2024-Update
Seita.9G002000.1 No alias component *(LUG/LUH) of transcriptional co-repressor complex 0.07 Orthogroups_2024-Update
Solyc06g083460 No alias Transcriptional corepressor LEUNIG (AHRD V3.3 *-* W9S398_9ROSA) 0.03 Orthogroups_2024-Update
Sopen02g022840 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
InterPro domains Description Start Stop
IPR006594 LisH 10 33
IPR001680 WD40_repeat 565 600
IPR001680 WD40_repeat 654 685
IPR001680 WD40_repeat 488 515
IPR001680 WD40_repeat 526 557
IPR001680 WD40_repeat 736 768
No external refs found!